VTK
9.1.0
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Read ADIOS2 bp files. More...
#include <vtkADIOS2CoreImageReader.h>
Public Types | |
enum class | VarType { PointData , CellData } |
using | Params = std::map< std::string, std::string > |
using | StringToParams = std::map< std::string, Params > |
using | InquireVariablesType = std::vector< std::pair< std::string, VarType > > |
typedef vtkDataObjectAlgorithm | Superclass |
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typedef vtkAlgorithm | Superclass |
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enum | DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION } |
Values used for setting the desired output precision for various algorithms. More... | |
typedef vtkObject | Superclass |
Public Member Functions | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. More... | |
vtkADIOS2CoreImageReader * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. More... | |
int | CanReadFile (VTK_FILEPATH const std::string &name) |
Test whether or not a given file should even be attempted for use with this reader. More... | |
virtual int | CanReadFile (VTK_FILEPATH const char *filename) |
void | SetFileName (VTK_FILEPATH const char *filename) |
vtkStringArray * | GetAllTimeStepArrays () |
virtual int | ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override |
The main interface which triggers the reader to start. More... | |
virtual void | SetFileName (std::string) |
Get/Set the input filename. More... | |
virtual std::string | GetFileName () |
Get/Set the input filename. More... | |
virtual void | SetOrigin (double, double, double) |
Get/Set the origin of output vtkImageData. More... | |
virtual void | SetOrigin (double[3]) |
Get/Set the origin of output vtkImageData. More... | |
virtual double * | GetOrigin () |
Get/Set the origin of output vtkImageData. More... | |
virtual void | GetOrigin (double &, double &, double &) |
Get/Set the origin of output vtkImageData. More... | |
virtual void | GetOrigin (double[3]) |
Get/Set the origin of output vtkImageData. More... | |
virtual void | SetSpacing (double, double, double) |
Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0. More... | |
virtual void | SetSpacing (double[3]) |
Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0. More... | |
virtual double * | GetSpacing () |
Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0. More... | |
virtual void | GetSpacing (double &, double &, double &) |
Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0. More... | |
virtual void | GetSpacing (double[3]) |
Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0. More... | |
vtkStringArray * | GetAllDimensionArrays () |
Get/Set the name of the array to deduce the dimension of vtkImageData. More... | |
virtual void | SetDimensionArray (std::string) |
Get/Set the name of the array to deduce the dimension of vtkImageData. More... | |
virtual std::string | GetDimensionArray () |
Get/Set the name of the array to deduce the dimension of vtkImageData. More... | |
virtual void | SetDimensionArrayAsCell (bool) |
Enable/Disable the assumption that the dimension array is cell data. More... | |
virtual bool | GetDimensionArrayAsCell () |
Enable/Disable the assumption that the dimension array is cell data. More... | |
virtual void | DimensionArrayAsCellOn () |
Enable/Disable the assumption that the dimension array is cell data. More... | |
virtual void | DimensionArrayAsCellOff () |
Enable/Disable the assumption that the dimension array is cell data. More... | |
virtual void | SetTimeStepArray (std::string) |
Get/Set the name of the time step array. More... | |
virtual std::string | GetTimeStepArray () |
Get/Set the name of the time step array. More... | |
int | GetNumberOfArrays () |
Get information about arrays. More... | |
const char * | GetArrayName (int index) |
Get information about arrays. More... | |
void | SetArrayStatus (const char *name, int status) |
Set the array that should be read in. More... | |
int | GetArrayStatus (const char *name) |
Get information about arrays. More... | |
virtual void | SetIsColumnMajor (bool) |
Enable/Disable the assumption that the order of input data is column major. More... | |
virtual bool | GetIsColumnMajor () |
Enable/Disable the assumption that the order of input data is column major. More... | |
virtual void | IsColumnMajorOn () |
Enable/Disable the assumption that the order of input data is column major. More... | |
virtual void | IsColumnMajorOff () |
Enable/Disable the assumption that the order of input data is column major. More... | |
void | SetActiveScalar (const std::pair< std::string, VarType > &inqVars) |
Get/Set the active scalar on each image block. More... | |
std::pair< std::string, VarType > & | GetActiveScalar () |
Get/Set the active scalar on each image block. More... | |
const std::pair< std::string, VarType > & | GetActiveScalar () const |
Get/Set the active scalar on each image block. More... | |
StringToParams & | GetAvilableVariables () |
Get the available variables. More... | |
const StringToParams & | GetAvilableVariables () const |
Get/Set the active scalar on each image block. More... | |
StringToParams & | GetAvailableAttributes () |
Get the available attributes. More... | |
const StringToParams & | GetAvailableAttributes () const |
Get/Set the active scalar on each image block. More... | |
void | SetController (vtkMultiProcessController *) |
Set the MPI controller. More... | |
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virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. More... | |
vtkDataObjectAlgorithm * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. More... | |
vtkTypeBool | ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override |
see vtkAlgorithm for details More... | |
vtkDataObject * | GetInput () |
vtkDataObject * | GetInput (int port) |
vtkDataObject * | GetOutput () |
Get the output data object for a port on this algorithm. More... | |
vtkDataObject * | GetOutput (int) |
Get the output data object for a port on this algorithm. More... | |
virtual void | SetOutput (vtkDataObject *d) |
Get the output data object for a port on this algorithm. More... | |
void | SetInputData (vtkDataObject *) |
Assign a data object as input. More... | |
void | SetInputData (int, vtkDataObject *) |
Assign a data object as input. More... | |
void | AddInputData (vtkDataObject *) |
Assign a data object as input. More... | |
void | AddInputData (int, vtkDataObject *) |
Assign a data object as input. More... | |
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virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. More... | |
vtkAlgorithm * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. More... | |
int | HasExecutive () |
Check whether this algorithm has an assigned executive. More... | |
vtkExecutive * | GetExecutive () |
Get this algorithm's executive. More... | |
virtual void | SetExecutive (vtkExecutive *executive) |
Set this algorithm's executive. More... | |
virtual vtkTypeBool | ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo) |
Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality. More... | |
vtkTypeBool | ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo) |
Version of ProcessRequest() that is wrapped. More... | |
virtual int | ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime) |
A special version of ProcessRequest meant specifically for the pipeline modified time request. More... | |
virtual int | ModifyRequest (vtkInformation *request, int when) |
This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded. More... | |
vtkInformation * | GetInputPortInformation (int port) |
Get the information object associated with an input port. More... | |
vtkInformation * | GetOutputPortInformation (int port) |
Get the information object associated with an output port. More... | |
int | GetNumberOfInputPorts () |
Get the number of input ports used by the algorithm. More... | |
int | GetNumberOfOutputPorts () |
Get the number of output ports provided by the algorithm. More... | |
void | SetProgress (double) |
SetProgress is deprecated. More... | |
void | UpdateProgress (double amount) |
Update the progress of the process object. More... | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName) |
String based versions of SetInputArrayToProcess(). More... | |
vtkInformation * | GetInputArrayInformation (int idx) |
Get the info object for the specified input array to this algorithm. More... | |
void | RemoveAllInputs () |
Remove all the input data. More... | |
vtkDataObject * | GetOutputDataObject (int port) |
Get the data object that will contain the algorithm output for the given port. More... | |
vtkDataObject * | GetInputDataObject (int port, int connection) |
Get the data object that will contain the algorithm input for the given port and given connection. More... | |
virtual void | RemoveInputConnection (int port, vtkAlgorithmOutput *input) |
Remove a connection from the given input port index. More... | |
virtual void | RemoveInputConnection (int port, int idx) |
Remove a connection given by index idx. More... | |
virtual void | RemoveAllInputConnections (int port) |
Removes all input connections. More... | |
virtual void | SetInputDataObject (int port, vtkDataObject *data) |
Sets the data-object as an input on the given port index. More... | |
virtual void | SetInputDataObject (vtkDataObject *data) |
virtual void | AddInputDataObject (int port, vtkDataObject *data) |
Add the data-object as an input to this given port. More... | |
virtual void | AddInputDataObject (vtkDataObject *data) |
vtkAlgorithmOutput * | GetOutputPort (int index) |
Get a proxy object corresponding to the given output port of this algorithm. More... | |
vtkAlgorithmOutput * | GetOutputPort () |
int | GetNumberOfInputConnections (int port) |
Get the number of inputs currently connected to a port. More... | |
int | GetTotalNumberOfInputConnections () |
Get the total number of inputs for this algorithm. More... | |
vtkAlgorithmOutput * | GetInputConnection (int port, int index) |
Get the algorithm output port connected to an input port. More... | |
vtkAlgorithm * | GetInputAlgorithm (int port, int index, int &algPort) |
Returns the algorithm and the output port index of that algorithm connected to a port-index pair. More... | |
vtkAlgorithm * | GetInputAlgorithm (int port, int index) |
Returns the algorithm connected to a port-index pair. More... | |
vtkAlgorithm * | GetInputAlgorithm () |
Equivalent to GetInputAlgorithm(0, 0). More... | |
vtkExecutive * | GetInputExecutive (int port, int index) |
Returns the executive associated with a particular input connection. More... | |
vtkExecutive * | GetInputExecutive () |
Equivalent to GetInputExecutive(0, 0) More... | |
vtkInformation * | GetInputInformation (int port, int index) |
Return the information object that is associated with a particular input connection. More... | |
vtkInformation * | GetInputInformation () |
Equivalent to GetInputInformation(0, 0) More... | |
vtkInformation * | GetOutputInformation (int port) |
Return the information object that is associated with a particular output port. More... | |
virtual vtkTypeBool | Update (int port, vtkInformationVector *requests) |
This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date). More... | |
virtual vtkTypeBool | Update (vtkInformation *requests) |
Convenience method to update an algorithm after passing requests to its first output port. More... | |
virtual int | UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr) |
Convenience method to update an algorithm after passing requests to its first output port. More... | |
virtual int | UpdateExtent (const int extents[6]) |
Convenience method to update an algorithm after passing requests to its first output port. More... | |
virtual int | UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr) |
Convenience method to update an algorithm after passing requests to its first output port. More... | |
virtual void | UpdateInformation () |
Bring the algorithm's information up-to-date. More... | |
virtual void | UpdateDataObject () |
Create output object(s). More... | |
virtual void | PropagateUpdateExtent () |
Propagate meta-data upstream. More... | |
virtual void | UpdateWholeExtent () |
Bring this algorithm's outputs up-to-date. More... | |
void | ConvertTotalInputToPortConnection (int ind, int &port, int &conn) |
Convenience routine to convert from a linear ordering of input connections to a port/connection pair. More... | |
virtual vtkInformation * | GetInformation () |
Set/Get the information object associated with this algorithm. More... | |
virtual void | SetInformation (vtkInformation *) |
Set/Get the information object associated with this algorithm. More... | |
void | Register (vtkObjectBase *o) override |
Participate in garbage collection. More... | |
void | UnRegister (vtkObjectBase *o) override |
Participate in garbage collection. More... | |
virtual void | SetAbortExecute (vtkTypeBool) |
Set/Get the AbortExecute flag for the process object. More... | |
virtual vtkTypeBool | GetAbortExecute () |
Set/Get the AbortExecute flag for the process object. More... | |
virtual void | AbortExecuteOn () |
Set/Get the AbortExecute flag for the process object. More... | |
virtual void | AbortExecuteOff () |
Set/Get the AbortExecute flag for the process object. More... | |
virtual double | GetProgress () |
Get the execution progress of a process object. More... | |
void | SetProgressShiftScale (double shift, double scale) |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. More... | |
virtual double | GetProgressShift () |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. More... | |
virtual double | GetProgressScale () |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. More... | |
void | SetProgressText (const char *ptext) |
Set the current text message associated with the progress state. More... | |
virtual char * | GetProgressText () |
Set the current text message associated with the progress state. More... | |
virtual unsigned long | GetErrorCode () |
The error code contains a possible error that occurred while reading or writing the file. More... | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name) |
Set the input data arrays that this algorithm will process. More... | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType) |
Set the input data arrays that this algorithm will process. More... | |
virtual void | SetInputArrayToProcess (int idx, vtkInformation *info) |
Set the input data arrays that this algorithm will process. More... | |
virtual void | SetInputConnection (int port, vtkAlgorithmOutput *input) |
Set the connection for the given input port index. More... | |
virtual void | SetInputConnection (vtkAlgorithmOutput *input) |
Set the connection for the given input port index. More... | |
virtual void | AddInputConnection (int port, vtkAlgorithmOutput *input) |
Add a connection to the given input port index. More... | |
virtual void | AddInputConnection (vtkAlgorithmOutput *input) |
Add a connection to the given input port index. More... | |
virtual void | Update (int port) |
Bring this algorithm's outputs up-to-date. More... | |
virtual void | Update () |
Bring this algorithm's outputs up-to-date. More... | |
virtual void | SetReleaseDataFlag (int) |
Turn release data flag on or off for all output ports. More... | |
virtual int | GetReleaseDataFlag () |
Turn release data flag on or off for all output ports. More... | |
void | ReleaseDataFlagOn () |
Turn release data flag on or off for all output ports. More... | |
void | ReleaseDataFlagOff () |
Turn release data flag on or off for all output ports. More... | |
int | UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output) |
This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More... | |
int | UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType) |
This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More... | |
int * | GetUpdateExtent () |
These functions return the update extent for output ports that use 3D extents. More... | |
int * | GetUpdateExtent (int port) |
These functions return the update extent for output ports that use 3D extents. More... | |
void | GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1) |
These functions return the update extent for output ports that use 3D extents. More... | |
void | GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1) |
These functions return the update extent for output ports that use 3D extents. More... | |
void | GetUpdateExtent (int extent[6]) |
These functions return the update extent for output ports that use 3D extents. More... | |
void | GetUpdateExtent (int port, int extent[6]) |
These functions return the update extent for output ports that use 3D extents. More... | |
int | GetUpdatePiece () |
These functions return the update extent for output ports that use piece extents. More... | |
int | GetUpdatePiece (int port) |
These functions return the update extent for output ports that use piece extents. More... | |
int | GetUpdateNumberOfPieces () |
These functions return the update extent for output ports that use piece extents. More... | |
int | GetUpdateNumberOfPieces (int port) |
These functions return the update extent for output ports that use piece extents. More... | |
int | GetUpdateGhostLevel () |
These functions return the update extent for output ports that use piece extents. More... | |
int | GetUpdateGhostLevel (int port) |
These functions return the update extent for output ports that use piece extents. More... | |
void | SetProgressObserver (vtkProgressObserver *) |
If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More... | |
virtual vtkProgressObserver * | GetProgressObserver () |
If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More... | |
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vtkBaseTypeMacro (vtkObject, vtkObjectBase) | |
virtual void | DebugOn () |
Turn debugging output on. More... | |
virtual void | DebugOff () |
Turn debugging output off. More... | |
bool | GetDebug () |
Get the value of the debug flag. More... | |
void | SetDebug (bool debugFlag) |
Set the value of the debug flag. More... | |
virtual void | Modified () |
Update the modification time for this object. More... | |
virtual vtkMTimeType | GetMTime () |
Return this object's modified time. More... | |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. More... | |
void | RemoveObserver (unsigned long tag) |
void | RemoveObservers (unsigned long event) |
void | RemoveObservers (const char *event) |
void | RemoveAllObservers () |
vtkTypeBool | HasObserver (unsigned long event) |
vtkTypeBool | HasObserver (const char *event) |
int | InvokeEvent (unsigned long event) |
int | InvokeEvent (const char *event) |
unsigned long | AddObserver (unsigned long event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
unsigned long | AddObserver (const char *event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
vtkCommand * | GetCommand (unsigned long tag) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
void | RemoveObserver (vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
void | RemoveObservers (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
void | RemoveObservers (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
vtkTypeBool | HasObserver (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
vtkTypeBool | HasObserver (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. More... | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More... | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More... | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Allow user to set the AbortFlagOn() with the return value of the callback method. More... | |
int | InvokeEvent (unsigned long event, void *callData) |
This method invokes an event and return whether the event was aborted or not. More... | |
int | InvokeEvent (const char *event, void *callData) |
This method invokes an event and return whether the event was aborted or not. More... | |
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const char * | GetClassName () const |
Return the class name as a string. More... | |
virtual vtkTypeBool | IsA (const char *name) |
Return 1 if this class is the same type of (or a subclass of) the named class. More... | |
virtual vtkIdType | GetNumberOfGenerationsFromBase (const char *name) |
Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More... | |
virtual void | Delete () |
Delete a VTK object. More... | |
virtual void | FastDelete () |
Delete a reference to this object. More... | |
void | InitializeObjectBase () |
void | Print (ostream &os) |
Print an object to an ostream. More... | |
virtual void | Register (vtkObjectBase *o) |
Increase the reference count (mark as used by another object). More... | |
virtual void | UnRegister (vtkObjectBase *o) |
Decrease the reference count (release by another object). More... | |
int | GetReferenceCount () |
Return the current reference count of this object. More... | |
void | SetReferenceCount (int) |
Sets the reference count. More... | |
bool | GetIsInMemkind () const |
A local state flag that remembers whether this object lives in the normal or extended memory space. More... | |
virtual void | PrintHeader (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. More... | |
virtual void | PrintTrailer (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. More... | |
Static Public Member Functions | |
static vtkADIOS2CoreImageReader * | New (void) |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkADIOS2CoreImageReader * | SafeDownCast (vtkObjectBase *o) |
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static vtkDataObjectAlgorithm * | New () |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkDataObjectAlgorithm * | SafeDownCast (vtkObjectBase *o) |
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static vtkAlgorithm * | New () |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkAlgorithm * | SafeDownCast (vtkObjectBase *o) |
static vtkInformationIntegerKey * | INPUT_IS_OPTIONAL () |
Keys used to specify input port requirements. More... | |
static vtkInformationIntegerKey * | INPUT_IS_REPEATABLE () |
static vtkInformationInformationVectorKey * | INPUT_REQUIRED_FIELDS () |
static vtkInformationStringVectorKey * | INPUT_REQUIRED_DATA_TYPE () |
static vtkInformationInformationVectorKey * | INPUT_ARRAYS_TO_PROCESS () |
static vtkInformationIntegerKey * | INPUT_PORT () |
static vtkInformationIntegerKey * | INPUT_CONNECTION () |
static vtkInformationIntegerKey * | CAN_PRODUCE_SUB_EXTENT () |
This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent. More... | |
static vtkInformationIntegerKey * | CAN_HANDLE_PIECE_REQUEST () |
Key that tells the pipeline that a particular algorithm can or cannot handle piece request. More... | |
static void | SetDefaultExecutivePrototype (vtkExecutive *proto) |
If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance(). More... | |
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static vtkObject * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More... | |
static void | BreakOnError () |
This method is called when vtkErrorMacro executes. More... | |
static void | SetGlobalWarningDisplay (int val) |
This is a global flag that controls whether any debug, warning or error messages are displayed. More... | |
static void | GlobalWarningDisplayOn () |
This is a global flag that controls whether any debug, warning or error messages are displayed. More... | |
static void | GlobalWarningDisplayOff () |
This is a global flag that controls whether any debug, warning or error messages are displayed. More... | |
static int | GetGlobalWarningDisplay () |
This is a global flag that controls whether any debug, warning or error messages are displayed. More... | |
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static vtkTypeBool | IsTypeOf (const char *name) |
Return 1 if this class type is the same type of (or a subclass of) the named class. More... | |
static vtkIdType | GetNumberOfGenerationsFromBaseType (const char *name) |
Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More... | |
static vtkObjectBase * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More... | |
static void | SetMemkindDirectory (const char *directoryname) |
The name of a directory, ideally mounted -o dax, to memory map an extended memory space within. More... | |
static bool | GetUsingMemkind () |
A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space. More... | |
Protected Member Functions | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkADIOS2CoreImageReader () | |
~vtkADIOS2CoreImageReader () override | |
int | RequestDataObjectInternal (vtkInformationVector *) |
virtual int | RequestInformation (vtkInformation *request, vtkInformationVector **input, vtkInformationVector *output) override |
virtual int | RequestData (vtkInformation *request, vtkInformationVector **input, vtkInformationVector *output) override |
std::string | FetchTypeStringFromVarName (const std::string &name) |
void | UpdateDimensionFromDimensionArray () |
bool | OpenAndReadMetaData () |
void | ConvertArraySelectionToInqVar () |
bool | InitWorkDistribution () |
void | ReadImageBlocks (vtkMultiBlockDataSet *mbds) |
bool | GatherTimeSteps () |
template<typename T > | |
void | CalculateWorkDistribution (const std::string &varName) |
template<typename T , template< typename... > class U> | |
vtkSmartPointer< vtkAbstractArray > | PopulateDataArrayFromVar (const std::string &varName, size_t blockIndex) |
template<typename T > | |
void | GatherTimeStepsFromADIOSTimeArray () |
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virtual vtkObjectBase * | NewInstanceInternal () const |
vtkDataObjectAlgorithm () | |
~vtkDataObjectAlgorithm () override | |
virtual int | RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) |
virtual int | RequestDataObject (vtkInformation *, vtkInformationVector **, vtkInformationVector *) |
This is called by the superclass. More... | |
virtual int | RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *) |
This is called by the superclass. More... | |
virtual int | RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *) |
int | FillOutputPortInformation (int port, vtkInformation *info) override |
Fill the output port information objects for this algorithm. More... | |
int | FillInputPortInformation (int port, vtkInformation *info) override |
Fill the input port information objects for this algorithm. More... | |
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virtual vtkObjectBase * | NewInstanceInternal () const |
vtkAlgorithm () | |
~vtkAlgorithm () override | |
virtual int | FillInputPortInformation (int port, vtkInformation *info) |
Fill the input port information objects for this algorithm. More... | |
virtual int | FillOutputPortInformation (int port, vtkInformation *info) |
Fill the output port information objects for this algorithm. More... | |
virtual void | SetNumberOfInputPorts (int n) |
Set the number of input ports used by the algorithm. More... | |
virtual void | SetNumberOfOutputPorts (int n) |
Set the number of output ports provided by the algorithm. More... | |
int | InputPortIndexInRange (int index, const char *action) |
int | OutputPortIndexInRange (int index, const char *action) |
int | GetInputArrayAssociation (int idx, vtkInformationVector **inputVector) |
Get the assocition of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More... | |
vtkInformation * | GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector) |
This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector. More... | |
virtual vtkExecutive * | CreateDefaultExecutive () |
Create a default executive. More... | |
void | ReportReferences (vtkGarbageCollector *) override |
virtual void | SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input) |
Replace the Nth connection on the given input port. More... | |
virtual void | SetNumberOfInputConnections (int port, int n) |
Set the number of input connections on the given input port. More... | |
void | SetInputDataInternal (int port, vtkDataObject *input) |
These methods are used by subclasses to implement methods to set data objects directly as input. More... | |
void | AddInputDataInternal (int port, vtkDataObject *input) |
int | GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. More... | |
int | GetInputArrayAssociation (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkInformationVector **inputVector) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkDataObject *input, int &association) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. More... | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association) |
Filters that have multiple connections on one port can use this signature. More... | |
virtual void | SetErrorCode (unsigned long) |
The error code contains a possible error that occurred while reading or writing the file. More... | |
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vtkObject () | |
~vtkObject () override | |
void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr) |
These methods allow a command to exclusively grab all events. More... | |
void | InternalReleaseFocus () |
These methods allow a command to exclusively grab all events. More... | |
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vtkObjectBase () | |
virtual | ~vtkObjectBase () |
virtual void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | ReportReferences (vtkGarbageCollector *) |
vtkObjectBase (const vtkObjectBase &) | |
void | operator= (const vtkObjectBase &) |
Protected Attributes | |
std::string | FileName |
bool | DimensionArrayAsCell |
bool | IsColumnMajor |
std::string | DimensionArray |
std::string | TimeStepArray |
double | Origin [3] |
double | Spacing [3] |
int | Dimension [3] |
double | RequestTimeStep |
vtkSmartPointer< vtkMultiProcessController > | Controller |
std::unique_ptr< vtkADIOS2CoreImageReaderImpl > | Impl |
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vtkInformation * | Information |
double | Progress |
char * | ProgressText |
vtkProgressObserver * | ProgressObserver |
unsigned long | ErrorCode |
The error code contains a possible error that occurred while reading or writing the file. More... | |
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bool | Debug |
vtkTimeStamp | MTime |
vtkSubjectHelper * | SubjectHelper |
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std::atomic< int32_t > | ReferenceCount |
vtkWeakPointerBase ** | WeakPointers |
Additional Inherited Members | |
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vtkTypeBool | AbortExecute |
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static bool | SetOutputDataObject (int dataType, vtkInformation *outputInformation, bool exact=false) |
A helper method that can be used by subclasses in RequestDataObject to create an output data object of the given type if not already present. More... | |
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static vtkInformationIntegerKey * | PORT_REQUIREMENTS_FILLED () |
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static vtkMallocingFunction | GetCurrentMallocFunction () |
static vtkReallocingFunction | GetCurrentReallocFunction () |
static vtkFreeingFunction | GetCurrentFreeFunction () |
static vtkFreeingFunction | GetAlternateFreeFunction () |
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static vtkExecutive * | DefaultExecutivePrototype |
Read ADIOS2 bp files.
vtkADIOS2CoreImageReader reads ADIOS2 bp data files so that they can be processed or visualized using VTK as vtkImageDatas. When processing data, the assumption is that the all variables share the same number of blocks. If the the data has multiple time steps, the user can specify the name of the time array then reader will use it to calculate the number of time steps. By default we flips the dimensions as vtk data array uses column major order whereas adios2 uses row major order. Check IsColumnMajor flag for more details. This reader can be launched either in serial or parallel. TODO: Expose attribute info in PV GUI.
@par Tests: @ref c2_vtk_t_vtkADIOS2CoreImageReader "vtkADIOS2CoreImageReader (Tests)"
Definition at line 60 of file vtkADIOS2CoreImageReader.h.
using vtkADIOS2CoreImageReader::Params = std::map<std::string, std::string> |
Definition at line 68 of file vtkADIOS2CoreImageReader.h.
using vtkADIOS2CoreImageReader::StringToParams = std::map<std::string, Params> |
Definition at line 69 of file vtkADIOS2CoreImageReader.h.
using vtkADIOS2CoreImageReader::InquireVariablesType = std::vector<std::pair<std::string, VarType> > |
Definition at line 70 of file vtkADIOS2CoreImageReader.h.
Definition at line 72 of file vtkADIOS2CoreImageReader.h.
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Definition at line 63 of file vtkADIOS2CoreImageReader.h.
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Return 1 if this class is the same type of (or a subclass of) the named class.
Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.
Reimplemented from vtkDataObjectAlgorithm.
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Reimplemented from vtkDataObjectAlgorithm.
vtkADIOS2CoreImageReader * vtkADIOS2CoreImageReader::NewInstance | ( | ) | const |
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Methods invoked by print to print information about the object including superclasses.
Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from vtkDataObjectAlgorithm.
int vtkADIOS2CoreImageReader::CanReadFile | ( | VTK_FILEPATH const std::string & | name | ) |
Test whether or not a given file should even be attempted for use with this reader.
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Get/Set the input filename.
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Get/Set the input filename.
void vtkADIOS2CoreImageReader::SetFileName | ( | VTK_FILEPATH const char * | filename | ) |
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Get/Set the origin of output vtkImageData.
Default to be the origin point.
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Get/Set the origin of output vtkImageData.
Default to be the origin point.
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Get/Set the origin of output vtkImageData.
Default to be the origin point.
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Get/Set the origin of output vtkImageData.
Default to be the origin point.
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Get/Set the origin of output vtkImageData.
Default to be the origin point.
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Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0.
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Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0.
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Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0.
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Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0.
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Get/Set the spacing of output vtkImageData Default to be 1.0, 1.0, 1.0.
vtkStringArray * vtkADIOS2CoreImageReader::GetAllDimensionArrays | ( | ) |
Get/Set the name of the array to deduce the dimension of vtkImageData.
You can toggle the DimensionArrayAsCell flag as needed.
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Get/Set the name of the array to deduce the dimension of vtkImageData.
You can toggle the DimensionArrayAsCell flag as needed.
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Get/Set the name of the array to deduce the dimension of vtkImageData.
You can toggle the DimensionArrayAsCell flag as needed.
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Enable/Disable the assumption that the dimension array is cell data.
On by default.
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Enable/Disable the assumption that the dimension array is cell data.
On by default.
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Enable/Disable the assumption that the dimension array is cell data.
On by default.
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Enable/Disable the assumption that the dimension array is cell data.
On by default.
vtkStringArray * vtkADIOS2CoreImageReader::GetAllTimeStepArrays | ( | ) |
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Get/Set the name of the time step array.
Once it's set, vtk will try to populate the time step info from this array.
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Get/Set the name of the time step array.
Once it's set, vtk will try to populate the time step info from this array.
int vtkADIOS2CoreImageReader::GetNumberOfArrays | ( | ) |
Get information about arrays.
As is typical with readers this is only valid after the filename is set and UpdateInformation() has been called. Since adios2 does not differentiate between cell arrays and point arrays, the dimensions info is appended to the name so that it can used to kdetermine the type of the array. The array name includes its dimension.
const char * vtkADIOS2CoreImageReader::GetArrayName | ( | int | index | ) |
Get information about arrays.
As is typical with readers this is only valid after the filename is set and UpdateInformation() has been called. Since adios2 does not differentiate between cell arrays and point arrays, the dimensions info is appended to the name so that it can used to kdetermine the type of the array. The array name includes its dimension.
void vtkADIOS2CoreImageReader::SetArrayStatus | ( | const char * | name, |
int | status | ||
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Set the array that should be read in.
Based on the dimension info, proper adios2 arrays will be read in as point or cell dota.
int vtkADIOS2CoreImageReader::GetArrayStatus | ( | const char * | name | ) |
Get information about arrays.
As is typical with readers this is only valid after the filename is set and UpdateInformation() has been called. Since adios2 does not differentiate between cell arrays and point arrays, the dimensions info is appended to the name so that it can used to kdetermine the type of the array. The array name includes its dimension.
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Enable/Disable the assumption that the order of input data is column major.
Off by default. As VTK's order is column major(Fortran order) whereas adios2 uses row major(C order), we flip the dimensions here to avoid a deep copy.
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Enable/Disable the assumption that the order of input data is column major.
Off by default. As VTK's order is column major(Fortran order) whereas adios2 uses row major(C order), we flip the dimensions here to avoid a deep copy.
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Enable/Disable the assumption that the order of input data is column major.
Off by default. As VTK's order is column major(Fortran order) whereas adios2 uses row major(C order), we flip the dimensions here to avoid a deep copy.
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Enable/Disable the assumption that the order of input data is column major.
Off by default. As VTK's order is column major(Fortran order) whereas adios2 uses row major(C order), we flip the dimensions here to avoid a deep copy.
void vtkADIOS2CoreImageReader::SetActiveScalar | ( | const std::pair< std::string, VarType > & | inqVars | ) |
Get/Set the active scalar on each image block.
std::pair< std::string, VarType > & vtkADIOS2CoreImageReader::GetActiveScalar | ( | ) |
Get/Set the active scalar on each image block.
const std::pair< std::string, VarType > & vtkADIOS2CoreImageReader::GetActiveScalar | ( | ) | const |
Get/Set the active scalar on each image block.
StringToParams & vtkADIOS2CoreImageReader::GetAvilableVariables | ( | ) |
Get the available variables.
Call this function after calling RequestInformation
const StringToParams & vtkADIOS2CoreImageReader::GetAvilableVariables | ( | ) | const |
Get/Set the active scalar on each image block.
StringToParams & vtkADIOS2CoreImageReader::GetAvailableAttributes | ( | ) |
Get the available attributes.
Call this function after calling RequestInformation
const StringToParams & vtkADIOS2CoreImageReader::GetAvailableAttributes | ( | ) | const |
Get/Set the active scalar on each image block.
void vtkADIOS2CoreImageReader::SetController | ( | vtkMultiProcessController * | ) |
Set the MPI controller.
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The main interface which triggers the reader to start.
Reimplemented from vtkDataObjectAlgorithm.
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Reimplemented from vtkDataObjectAlgorithm.
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Reimplemented from vtkDataObjectAlgorithm.
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Definition at line 254 of file vtkADIOS2CoreImageReader.h.
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Definition at line 256 of file vtkADIOS2CoreImageReader.h.
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Definition at line 257 of file vtkADIOS2CoreImageReader.h.
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Definition at line 259 of file vtkADIOS2CoreImageReader.h.
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Definition at line 260 of file vtkADIOS2CoreImageReader.h.
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Definition at line 262 of file vtkADIOS2CoreImageReader.h.
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Definition at line 263 of file vtkADIOS2CoreImageReader.h.
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Definition at line 264 of file vtkADIOS2CoreImageReader.h.
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Definition at line 266 of file vtkADIOS2CoreImageReader.h.
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Definition at line 268 of file vtkADIOS2CoreImageReader.h.
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Definition at line 271 of file vtkADIOS2CoreImageReader.h.