measure distance from k-means cluster centers More...

#include <vtkKMeansDistanceFunctor.h>

Inheritance diagram for vtkKMeansDistanceFunctor:

Collaboration diagram for vtkKMeansDistanceFunctor:

Public Types
typedef vtkObject	Superclass

Public Member Functions
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

vtkKMeansDistanceFunctor *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses. More...

virtual vtkVariantArray *	GetEmptyTuple (vtkIdType dimension)
	Return an empty tuple. More...

virtual void	operator() (double &, vtkVariantArray , vtkVariantArray )
	Compute the distance from one observation to another, returning the distance in the first argument. More...

virtual void	PairwiseUpdate (vtkTable clusterCenters, vtkIdType row, vtkVariantArray data, vtkIdType dataCardinality, vtkIdType totalCardinality)
	This is called once per observation per run per iteration in order to assign the observation to its nearest cluster center after the distance functor has been evaluated for all the cluster centers. More...

virtual void	PerturbElement (vtkTable , vtkTable , vtkIdType, vtkIdType, vtkIdType, double)
	When a cluster center (1) has no observations that are closer to it than other cluster centers or (2) has exactly the same coordinates as another cluster center, its coordinates should be perturbed. More...

virtual void *	AllocateElementArray (vtkIdType size)
	Allocate an array large enough to hold size coordinates and return a void pointer to this array. More...

virtual void	DeallocateElementArray (void *)
	Free an array allocated with AllocateElementArray. More...

virtual vtkAbstractArray *	CreateCoordinateArray ()
	Return a vtkAbstractArray capable of holding cluster center coordinates. More...

virtual void	PackElements (vtkTable curTable, void vElements)
	Pack the cluster center coordinates in vElements into columns of curTable. More...

virtual int	GetDataType ()
	Return the data type used to store cluster center coordinates. More...


virtual void	UnPackElements (vtkTable curTable, vtkTable newTable, void vLocalElements, void vGlobalElements, int np)
	Unpack the cluster center coordinates in vElements into columns of curTable. More...

virtual void	UnPackElements (vtkTable curTable, void vLocalElements, vtkIdType numRows, vtkIdType numCols)
	Unpack the cluster center coordinates in vElements into columns of curTable. More...

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()
	Turn debugging output on. More...

virtual void	DebugOff ()
	Turn debugging output off. More...

bool	GetDebug ()
	Get the value of the debug flag. More...

void	SetDebug (bool debugFlag)
	Set the value of the debug flag. More...

virtual void	Modified ()
	Update the modification time for this object. More...

virtual vtkMTimeType	GetMTime ()
	Return this object's modified time. More...

void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses. More...

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

vtkTypeBool	HasObserver (unsigned long event)

vtkTypeBool	HasObserver (const char *event)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method. More...

int	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not. More...

int	InvokeEvent (const char event, void callData)
	This method invokes an event and return whether the event was aborted or not. More...

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string. More...

virtual vtkTypeBool	IsA (const char *name)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

virtual vtkIdType	GetNumberOfGenerationsFromBase (const char *name)
	Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More...

virtual void	Delete ()
	Delete a VTK object. More...

virtual void	FastDelete ()
	Delete a reference to this object. More...

void	InitializeObjectBase ()

void	Print (ostream &os)
	Print an object to an ostream. More...

virtual void	Register (vtkObjectBase *o)
	Increase the reference count (mark as used by another object). More...

virtual void	UnRegister (vtkObjectBase *o)
	Decrease the reference count (release by another object). More...

int	GetReferenceCount ()
	Return the current reference count of this object. More...

void	SetReferenceCount (int)
	Sets the reference count. More...

bool	GetIsInMemkind () const
	A local state flag that remembers whether this object lives in the normal or extended memory space. More...

virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

Static Public Member Functions
static vtkKMeansDistanceFunctor *	New ()

static vtkTypeBool	IsTypeOf (const char *type)

static vtkKMeansDistanceFunctor *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	BreakOnError ()
	This method is called when vtkErrorMacro executes. More...

static void	SetGlobalWarningDisplay (int val)
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static int	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class. More...

static vtkIdType	GetNumberOfGenerationsFromBaseType (const char *name)
	Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). More...

static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	SetMemkindDirectory (const char *directoryname)
	The name of a directory, ideally mounted -o dax, to memory map an extended memory space within. More...

static bool	GetUsingMemkind ()
	A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space. More...

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkKMeansDistanceFunctor ()

	~vtkKMeansDistanceFunctor () override

Protected Member Functions inherited from vtkObject
	vtkObject ()

	~vtkObject () override

void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=nullptr)
	These methods allow a command to exclusively grab all events. More...

void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events. More...

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	RegisterInternal (vtkObjectBase *, vtkTypeBool check)

virtual void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check)

virtual void	ReportReferences (vtkGarbageCollector *)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
vtkVariantArray *	EmptyTuple

vtkTable *	CenterUpdates

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
std::atomic< int32_t >	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Static Protected Member Functions inherited from vtkObjectBase
static vtkMallocingFunction	GetCurrentMallocFunction ()

static vtkReallocingFunction	GetCurrentReallocFunction ()

static vtkFreeingFunction	GetCurrentFreeFunction ()

static vtkFreeingFunction	GetAlternateFreeFunction ()

Detailed Description

measure distance from k-means cluster centers

This is an abstract class (with a default concrete subclass) that implements algorithms used by the vtkKMeansStatistics filter that rely on a distance metric. If you wish to use a non-Euclidean distance metric (this could include working with strings that do not have a Euclidean distance metric, implementing k-mediods, or trying distance metrics in norms other than L2), you should subclass vtkKMeansDistanceFunctor.

Definition at line 23 of file vtkKMeansDistanceFunctor.h.

Member Typedef Documentation

◆ Superclass

typedef vtkObject vtkKMeansDistanceFunctor::Superclass

Definition at line 27 of file vtkKMeansDistanceFunctor.h.

Constructor & Destructor Documentation

◆ vtkKMeansDistanceFunctor()

vtkKMeansDistanceFunctor::vtkKMeansDistanceFunctor ( )

protected

◆ ~vtkKMeansDistanceFunctor()

vtkKMeansDistanceFunctor::~vtkKMeansDistanceFunctor ( )

overrideprotected

Member Function Documentation

◆ New()

static vtkKMeansDistanceFunctor * vtkKMeansDistanceFunctor::New ( )

static

◆ IsTypeOf()

static vtkTypeBool vtkKMeansDistanceFunctor::IsTypeOf ( const char * type )

static

◆ IsA()

virtual vtkTypeBool vtkKMeansDistanceFunctor::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkObjectBase.

Reimplemented in vtkKMeansDistanceFunctorCalculator.

◆ SafeDownCast()

static vtkKMeansDistanceFunctor * vtkKMeansDistanceFunctor::SafeDownCast ( vtkObjectBase * o )

static

◆ NewInstanceInternal()

virtual vtkObjectBase * vtkKMeansDistanceFunctor::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented in vtkKMeansDistanceFunctorCalculator.

◆ NewInstance()

vtkKMeansDistanceFunctor * vtkKMeansDistanceFunctor::NewInstance ( ) const

◆ PrintSelf()

void vtkKMeansDistanceFunctor::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkObject.

Reimplemented in vtkKMeansDistanceFunctorCalculator.

◆ GetEmptyTuple()

virtual vtkVariantArray * vtkKMeansDistanceFunctor::GetEmptyTuple ( vtkIdType dimension )

virtual

Return an empty tuple.

These values are used as cluster center coordinates when no initial cluster centers are specified.

◆ operator()()

virtual void vtkKMeansDistanceFunctor::operator()	(	double &	,
		vtkVariantArray *	,
		vtkVariantArray *
	)

virtual

Compute the distance from one observation to another, returning the distance in the first argument.

Reimplemented in vtkKMeansDistanceFunctorCalculator.

◆ PairwiseUpdate()

virtual void vtkKMeansDistanceFunctor::PairwiseUpdate	(	vtkTable *	clusterCenters,
		vtkIdType	row,
		vtkVariantArray *	data,
		vtkIdType	dataCardinality,
		vtkIdType	totalCardinality
	)

virtual

This is called once per observation per run per iteration in order to assign the observation to its nearest cluster center after the distance functor has been evaluated for all the cluster centers.

The distance functor is responsible for incrementally updating the cluster centers to account for the assignment.

◆ PerturbElement()

virtual void vtkKMeansDistanceFunctor::PerturbElement	(	vtkTable *	,
		vtkTable *	,
		vtkIdType	,
		vtkIdType	,
		vtkIdType	,
		double
	)

virtual

When a cluster center (1) has no observations that are closer to it than other cluster centers or (2) has exactly the same coordinates as another cluster center, its coordinates should be perturbed.

This function should perform that perturbation.

Since perturbation relies on a distance metric, this function is the responsibility of the distance functor.

◆ AllocateElementArray()

virtual void * vtkKMeansDistanceFunctor::AllocateElementArray ( vtkIdType size )

virtual

Allocate an array large enough to hold size coordinates and return a void pointer to this array.

This is used by vtkPKMeansStatistics to send (receive) cluster center coordinates to (from) other processes.

◆ DeallocateElementArray()

virtual void vtkKMeansDistanceFunctor::DeallocateElementArray ( void * )

virtual

Free an array allocated with AllocateElementArray.

◆ CreateCoordinateArray()

virtual vtkAbstractArray * vtkKMeansDistanceFunctor::CreateCoordinateArray ( )

virtual

Return a vtkAbstractArray capable of holding cluster center coordinates.

This is used by vtkPKMeansStatistics to hold cluster center coordinates sent to (received from) other processes.

◆ PackElements()

virtual void vtkKMeansDistanceFunctor::PackElements	(	vtkTable *	curTable,
		void *	vElements
	)

virtual

Pack the cluster center coordinates in vElements into columns of curTable.

This code may assume that the columns in curTable are all of the type returned by GetNewVTKArray().

◆ UnPackElements() [1/2]

virtual void vtkKMeansDistanceFunctor::UnPackElements	(	vtkTable *	curTable,
		vtkTable *	newTable,
		void *	vLocalElements,
		void *	vGlobalElements,
		int	np
	)

virtual

Unpack the cluster center coordinates in vElements into columns of curTable.

This code may assume that the columns in curTable are all of the type returned by GetNewVTKArray().

◆ UnPackElements() [2/2]

virtual void vtkKMeansDistanceFunctor::UnPackElements	(	vtkTable *	curTable,
		void *	vLocalElements,
		vtkIdType	numRows,
		vtkIdType	numCols
	)

virtual

Unpack the cluster center coordinates in vElements into columns of curTable.

This code may assume that the columns in curTable are all of the type returned by GetNewVTKArray().

◆ GetDataType()

virtual int vtkKMeansDistanceFunctor::GetDataType ( )

virtual

Return the data type used to store cluster center coordinates.

Member Data Documentation

◆ EmptyTuple

vtkVariantArray* vtkKMeansDistanceFunctor::EmptyTuple

protected

Definition at line 110 of file vtkKMeansDistanceFunctor.h.

◆ CenterUpdates

vtkTable* vtkKMeansDistanceFunctor::CenterUpdates

protected

Definition at line 112 of file vtkKMeansDistanceFunctor.h.

The documentation for this class was generated from the following file:

Filters/Statistics/vtkKMeansDistanceFunctor.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkKMeansDistanceFunctor()

◆ ~vtkKMeansDistanceFunctor()

Member Function Documentation

◆ New()

◆ IsTypeOf()

◆ IsA()

◆ SafeDownCast()

◆ NewInstanceInternal()

◆ NewInstance()

◆ PrintSelf()

◆ GetEmptyTuple()

◆ operator()()

◆ PairwiseUpdate()

◆ PerturbElement()

◆ AllocateElementArray()

◆ DeallocateElementArray()

◆ CreateCoordinateArray()

◆ PackElements()

◆ UnPackElements() [1/2]

◆ UnPackElements() [2/2]

◆ GetDataType()

Member Data Documentation

◆ EmptyTuple

◆ CenterUpdates