Implementation for the vtkHDFReader. More...

#include <vtkHDFReaderImplementation.h>

Classes
struct	TypeDescription
	Used to store HDF native types in a map. More...

Public Member Functions
	Implementation (vtkHDFReader *reader)

virtual	~Implementation ()

bool	Open (VTK_FILEPATH const char *fileName)
	Opens this VTK HDF file and checks if it is valid. More...

void	Close ()
	Closes the VTK HDF file and releases any allocated resources. More...

int	GetDataSetType ()
	Type of vtkDataSet stored by the HDF file, such as VTK_IMAGE_DATA or VTK_UNSTRUCTURED_GRID, from vtkTypes.h. More...

const std::array< int, 2 > &	GetVersion ()
	Returns the version of the VTK HDF implementation. More...

template<typename T >
bool	GetAttribute (const char attributeName, size_t numberOfElements, T value)
	Reads an attribute from the /VTKHDF group. More...

int	GetNumberOfPieces ()
	Returns the number of partitions for this dataset. More...

bool	GetPartitionExtent (hsize_t partitionIndex, int *extent)
	For an ImageData, sets the extent for 'partitionIndex'. More...

std::vector< std::string >	GetArrayNames (int attributeType)
	Returns the names of arrays for 'attributeType' (point or cell). More...

vtkDataArray *	NewArray (int attributeType, const char *name, const std::vector< hsize_t > &fileExtent)
	Reads and returns a new vtkDataArray. More...

vtkDataArray *	NewArray (int attributeType, const char *name, hsize_t offset, hsize_t size)

vtkAbstractArray *	NewFieldArray (const char *name)

vtkDataArray *	NewMetadataArray (const char *name, hsize_t offset, hsize_t size)
	Reads a 1D metadata array in a DataArray or a vector of vtkIdType. More...

std::vector< vtkIdType >	GetMetadata (const char *name, hsize_t size)

std::vector< hsize_t >	GetDimensions (const char *dataset)
	Returns the dimensions of a HDF dataset. More...

Protected Member Functions
hid_t	OpenDataSet (hid_t group, const char name, hid_t nativeType, std::vector< hsize_t > &dims)
	Opens the hdf5 dataset given the 'group' and 'name'. More...

template<typename T >
hid_t	TemplateTypeToHdfNativeType ()
	Convert C++ template type T to HDF5 native type this can be constexpr in C++17 standard. More...

template<typename T >
vtkDataArray *	NewVtkDataArray ()
	Create a vtkDataArray based on the C++ template type T. More...

vtkDataArray *	NewArray (hid_t group, const char *name, const std::vector< hsize_t > &fileExtent)
	Reads a vtkDataArray of type T from the attributeType, dataset The array has type 'T' and 'numberOfComponents'. More...

template<typename T >
vtkDataArray *	NewArray (hid_t dataset, const std::vector< hsize_t > &fileExtent, hsize_t numberOfComponents)

template<typename T >
bool	NewArray (hid_t dataset, const std::vector< hsize_t > &fileExtent, hsize_t numberOfComponents, T *data)

vtkStringArray *	NewStringArray (hid_t dataset, hsize_t size)

void	BuildTypeReaderMap ()
	Builds a map between native types and GetArray routines for that type. More...

TypeDescription	GetTypeDescription (hid_t type)
	Associates a struc of three integers with HDF type. More...

Detailed Description

Implementation for the vtkHDFReader.

Opens, closes and reads information from a VTK HDF file.

Definition at line 39 of file vtkHDFReaderImplementation.h.

Constructor & Destructor Documentation

◆ Implementation()

vtkHDFReader::Implementation::Implementation ( vtkHDFReader * reader )

◆ ~Implementation()

virtual vtkHDFReader::Implementation::~Implementation ( )

virtual

Member Function Documentation

◆ Open()

bool vtkHDFReader::Implementation::Open ( VTK_FILEPATH const char * fileName )

Opens this VTK HDF file and checks if it is valid.

◆ Close()

void vtkHDFReader::Implementation::Close ( )

Closes the VTK HDF file and releases any allocated resources.

◆ GetDataSetType()

int vtkHDFReader::Implementation::GetDataSetType ( )

inline

Type of vtkDataSet stored by the HDF file, such as VTK_IMAGE_DATA or VTK_UNSTRUCTURED_GRID, from vtkTypes.h.

Definition at line 56 of file vtkHDFReaderImplementation.h.

◆ GetVersion()

const std::array< int, 2 > & vtkHDFReader::Implementation::GetVersion ( )

inline

Returns the version of the VTK HDF implementation.

Definition at line 60 of file vtkHDFReaderImplementation.h.

◆ GetAttribute()

template<typename T >

template bool vtkHDFReader::Implementation::GetAttribute< double >	(	const char *	attributeName,
		size_t	numberOfElements,
		T *	value
	)

Reads an attribute from the /VTKHDF group.

◆ GetNumberOfPieces()

int vtkHDFReader::Implementation::GetNumberOfPieces ( )

inline

Returns the number of partitions for this dataset.

Definition at line 69 of file vtkHDFReaderImplementation.h.

◆ GetPartitionExtent()

bool vtkHDFReader::Implementation::GetPartitionExtent	(	hsize_t	partitionIndex,
		int *	extent
	)

For an ImageData, sets the extent for 'partitionIndex'.

Returns true for success and false otherwise.

◆ GetArrayNames()

std::vector< std::string > vtkHDFReader::Implementation::GetArrayNames ( int attributeType )

Returns the names of arrays for 'attributeType' (point or cell).

◆ NewArray() [1/5]

vtkDataArray * vtkHDFReader::Implementation::NewArray	(	int	attributeType,
		const char *	name,
		const std::vector< hsize_t > &	fileExtent
	)

Reads and returns a new vtkDataArray.

The actual type of the array depends on the type of the HDF array. The array is read from the PointData or CellData groups depending on the 'attributeType' parameter. There are two versions: a first one that reads from a 3D array using a fileExtent, and a second one that reads from a linear array using an offset and size. The array has to be deleted by the user.

◆ NewArray() [2/5]

vtkDataArray * vtkHDFReader::Implementation::NewArray	(	int	attributeType,
		const char *	name,
		hsize_t	offset,
		hsize_t	size
	)

◆ NewFieldArray()

vtkAbstractArray * vtkHDFReader::Implementation::NewFieldArray ( const char * name )

◆ NewMetadataArray()

vtkDataArray * vtkHDFReader::Implementation::NewMetadataArray	(	const char *	name,
		hsize_t	offset,
		hsize_t	size
	)

Reads a 1D metadata array in a DataArray or a vector of vtkIdType.

We read either the whole array for the vector version or a slice specified with (offset, size). For an error we return nullptr or an empty vector.

◆ GetMetadata()

std::vector< vtkIdType > vtkHDFReader::Implementation::GetMetadata	(	const char *	name,
		hsize_t	size
	)

◆ GetDimensions()

std::vector< hsize_t > vtkHDFReader::Implementation::GetDimensions ( const char * dataset )

Returns the dimensions of a HDF dataset.

◆ OpenDataSet()

hid_t vtkHDFReader::Implementation::OpenDataSet	(	hid_t	group,
		const char *	name,
		hid_t *	nativeType,
		std::vector< hsize_t > &	dims
	)

protected

Opens the hdf5 dataset given the 'group' and 'name'.

Returns the hdf dataset and sets 'nativeType' and 'dims'.

◆ TemplateTypeToHdfNativeType()

template<typename T >

hid_t vtkHDFReader::Implementation::TemplateTypeToHdfNativeType ( )

protected

Convert C++ template type T to HDF5 native type this can be constexpr in C++17 standard.

◆ NewVtkDataArray()

template<typename T >

vtkDataArray * vtkHDFReader::Implementation::NewVtkDataArray ( )

protected

Create a vtkDataArray based on the C++ template type T.

For instance, for a float we create a vtkFloatArray. this can be constexpr in C++17 standard

◆ NewArray() [3/5]

vtkDataArray * vtkHDFReader::Implementation::NewArray	(	hid_t	group,
		const char *	name,
		const std::vector< hsize_t > &	fileExtent
	)

protected

Reads a vtkDataArray of type T from the attributeType, dataset The array has type 'T' and 'numberOfComponents'.

We are reading fileExtent slab from the array. It returns the array or nullptr in case of an error. There are three cases for fileExtent: fileExtent.size() == 0 - in this case we expect a 1D array and we read the whole array. Used for field arrays. fileExtent.size()>>1 == ndims - in this case we read a scalar fileExtent.size()>>1 + 1 == ndims - in this case we read an array with the number of components > 1.

◆ NewArray() [4/5]

template<typename T >

vtkDataArray * vtkHDFReader::Implementation::NewArray	(	hid_t	dataset,
		const std::vector< hsize_t > &	fileExtent,
		hsize_t	numberOfComponents
	)

protected

◆ NewArray() [5/5]

template<typename T >

bool vtkHDFReader::Implementation::NewArray	(	hid_t	dataset,
		const std::vector< hsize_t > &	fileExtent,
		hsize_t	numberOfComponents,
		T *	data
	)

protected

◆ NewStringArray()

vtkStringArray * vtkHDFReader::Implementation::NewStringArray	(	hid_t	dataset,
		hsize_t	size
	)

protected

◆ BuildTypeReaderMap()

void vtkHDFReader::Implementation::BuildTypeReaderMap ( )

protected

Builds a map between native types and GetArray routines for that type.

◆ GetTypeDescription()

TypeDescription vtkHDFReader::Implementation::GetTypeDescription ( hid_t type )

protected

Associates a struc of three integers with HDF type.

This can be used as key in a map.

The documentation for this class was generated from the following file:

IO/HDF/vtkHDFReaderImplementation.h

Classes

Public Member Functions

Protected Member Functions

Detailed Description

Constructor & Destructor Documentation

◆ Implementation()

◆ ~Implementation()

Member Function Documentation

◆ Open()

◆ Close()

◆ GetDataSetType()

◆ GetVersion()

◆ GetAttribute()

◆ GetNumberOfPieces()

◆ GetPartitionExtent()

◆ GetArrayNames()

◆ NewArray() [1/5]

◆ NewArray() [2/5]

◆ NewFieldArray()

◆ NewMetadataArray()

◆ GetMetadata()

◆ GetDimensions()

◆ OpenDataSet()

◆ TemplateTypeToHdfNativeType()

◆ NewVtkDataArray()

◆ NewArray() [3/5]

◆ NewArray() [4/5]

◆ NewArray() [5/5]

◆ NewStringArray()

◆ BuildTypeReaderMap()

◆ GetTypeDescription()