pbcore package¶
Subpackages¶
- pbcore.chemistry package
- pbcore.data
- pbcore.io
- BAM format
BamAlignmentBamAlignment.DeletionQV()BamAlignment.DeletionTag()BamAlignment.HoleNumberBamAlignment.IPD()BamAlignment.InsertionQV()BamAlignment.MapQVBamAlignment.MergeQV()BamAlignment.PulseWidth()BamAlignment.SubstitutionQV()BamAlignment.barcodeBamAlignment.barcodeNameBamAlignment.baseFeature()BamAlignment.clippedTo()BamAlignment.hasPbiBamAlignment.hqRegionSnrBamAlignment.identityBamAlignment.isCCSBamAlignment.isForwardStrandBamAlignment.isMappedBamAlignment.isReverseStrandBamAlignment.isTranscriptBamAlignment.isUnmappedBamAlignment.mapQVBamAlignment.movieNameBamAlignment.numPassesBamAlignment.qEndBamAlignment.qIdBamAlignment.qLenBamAlignment.qNameBamAlignment.qStartBamAlignment.queryEndBamAlignment.queryNameBamAlignment.queryStartBamAlignment.read()BamAlignment.readGroupInfoBamAlignment.readPositions()BamAlignment.readScoreBamAlignment.readTypeBamAlignment.readerBamAlignment.reference()BamAlignment.referenceIdBamAlignment.referenceInfoBamAlignment.referenceNameBamAlignment.referencePositions()BamAlignment.scrapTypeBamAlignment.sequencingChemistryBamAlignment.tIdBamAlignment.transcript()BamAlignment.unrolledCigar()BamAlignment.zScore
BamReaderIndexedBamReader
- FASTA Format
- FASTQ Format
- GFF Format (Version 3)
- BAM format
- pbcore.model
- pbcore.util