pbcore.data

pbcore.data

pbcore.data.getAlignedBam()

Get a mapped BAM file

pbcore.data.getBcFofn()

pbcore.data.getBlasrM4()

pbcore.data.getBlasrM5()

pbcore.data.getCCSBAM()

pbcore.data.getDosFormattedFasta()

Returns the filename of an example FASTA file with DOS line endings

pbcore.data.getEmptyAlignedBam()

pbcore.data.getEmptyBam()

pbcore.data.getEmptyBam2()

pbcore.data.getFasta()

Returns the filename of an example FASTA file.

pbcore.data.getFofns()

Returns a list of FOFN files

pbcore.data.getGff3()

Returns the filename of an example GFFv3 file

pbcore.data.getLambdaFasta()

Returns the filename of the FASTA of the lambda phage reference.

pbcore.data.getMappingXml()

pbcore.data.getTinyFasta()

Returns the filename of an example FASTA file.

pbcore.data.getUnalignedBam()

Get the unaligned BAM file, corresponding to the same bax above

pbcore.data.getWeird()