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"0.9.3:  02/2014": [[19, "id22"]], "0.9.2: (01/2014)": [[19, "id23"]], "0.9: 10/2013": [[19, "id24"]], "0.8: 10/2012": [[19, "id25"]], "0.7.2: 08/2012": [[19, "id26"]], "0.7: 07/2012": [[19, "id27"]], "0.6: 07/2012": [[19, "id28"]], "0.5: 06/2012": [[19, "id29"]], "0.4: 06/2012": [[19, "id30"]], "0.3: 11/2011": [[19, "id31"]], "0.2: 07/2011": [[19, "id32"]], "0.1: 05/2011": [[19, "id33"]], "Test coverage report for pyFAI": [[20, "test-coverage-report-for-pyfai"]], "Test suite coverage": [[20, "id1"]], "Design of AzimuthalIntegrator": [[21, "design-of-azimuthalintegrator"]], "Abstract": [[21, "abstract"]], "AzimuthalIntegrator": [[21, "azimuthalintegrator"], [27, "azimuthalintegrator"]], "Azimuthal integration methods": [[21, "azimuthal-integration-methods"]], "Geometry": [[21, "geometry"], [27, "geometry"], [55, "geometry"]], "Detector": [[21, "detector"], [26, "detector"], [26, "id1"], [27, "detector"], [55, "detector"]], "Rebinning engines": [[21, "rebinning-engines"]], "Pixel splitting": [[21, "pixel-splitting"], [86, "Pixel-splitting"]], "Design of the library": [[22, "design-of-the-library"]], "Simple detector": [[23, "simple-detector"]], "Complex detectors": [[23, "complex-detectors"]], "Detectors classes": [[23, "detectors-classes"]], "Nexus Detectors": [[23, "nexus-detectors"]], "Conclusion": [[23, "conclusion"], [55, "conclusion"], [57, "conclusion"], [58, "Conclusion"], [60, "Conclusion"], [61, "Conclusion"], [64, "Conclusion"], [65, "Conclusion"], [67, "Conclusion"], [68, "Conclusion"], [69, "Conclusion"], [70, "Conclusion"], [71, "Conclusion"], [72, "Conclusion"], [73, "Conclusion"], [75, "Conclusion"], [76, "Conclusion"], [78, "Conclusion"], [80, "Conclusion"], [82, "Conclusion"], [83, "Conclusion"], [84, "Conclusion"], [85, "Conclusion"], [86, "Conclusion"], [87, "Conclusion"], [88, "Conclusion"], [92, "Conclusion"], [96, "Conclusion"], [97, "Conclusion"], [102, "Conclusion"], [104, "conclusion"]], "Ecosystem": [[24, "ecosystem"]], "Software pyFAI is relying on:": [[24, "software-pyfai-is-relying-on"]], "FabIO": [[24, "fabio"]], "Silx": [[24, "silx"]], "Program using pyFAI as a library": [[24, "program-using-pyfai-as-a-library"]], "Bubble": [[24, "bubble"]], "Dahu": [[24, "dahu"]], "Dioptas": [[24, "dioptas"]], "Dpdak": [[24, "dpdak"]], "EDNA": [[24, "edna"]], "LImA": [[24, "lima"]], "NanoPeakCell": [[24, "nanopeakcell"]], "pygix": [[24, "pygix"]], "PySAXS": [[24, "pysaxs"]], "Xi-cam": [[24, "xi-cam"]], "xPDFsuite": [[24, "xpdfsuite"]], "Image representation in Python": [[25, "image-representation-in-python"]], "Position of the observer": [[25, "position-of-the-observer"]], "Default geometry in pyFAI": [[25, "default-geometry-in-pyfai"]], "Detector position": [[25, "detector-position"]], "Geometry definition of pyFAI": [[26, "geometry-definition-of-pyfai"]], "Coordinates": [[26, "coordinates"], [26, "id2"], [26, "id5"]], "Units": [[26, "units"], [26, "id3"]], "Parameters": [[26, "parameters"], [26, "id4"]], "Offsets": [[26, "offsets"]], "Rotations": [[26, "rotations"], [26, "id6"]], "Inversion: Finding where a scattered beam hits the detector": [[26, "inversion-finding-where-a-scattered-beam-hits-the-detector"]], "Geometry definition of ImageD11": [[26, "geometry-definition-of-imaged11"]], "Transformation": [[26, "transformation"]], "Conversion": [[26, "conversion"]], "Detector D-matrix": [[26, "detector-d-matrix"]], "Translations and offsets": [[26, "translations-and-offsets"]], "Glossary": [[27, "glossary"]], "Distortion": [[27, "distortion"]], "Image": [[27, "image"]], "PONI": [[27, "poni"]], "PONI-File": [[27, "poni-file"]], "Worker": [[27, "worker"]], "Fast Azimuthal Integration using Python": [[28, "fast-azimuthal-integration-using-python"]], "Indices and tables": [[28, "indices-and-tables"]], "Calibration tool: MX-calibrate": [[29, "calibration-tool-mx-calibrate"]], "Purpose": [[29, "purpose"], [30, "purpose"], [31, "purpose"], [32, "purpose"], [33, "purpose"], [35, "purpose"], [36, "purpose"], [37, "purpose"], [38, "purpose"], [39, "purpose"], [41, "purpose"], [42, "purpose"], [44, "purpose"], [45, "purpose"], [47, "purpose"]], "Usage:": [[29, "usage"], [31, "usage"], [32, "usage"], [35, "usage"], [38, "usage"], [39, "usage"], [44, "usage"], [45, "usage"], [47, "usage"]], "Options:": [[29, "options"], [29, "id3"], [31, "options"], [33, "options"], [35, "options"], [36, "options"], [41, "options"], [42, "options"], [44, "options"], [45, "options"], [47, "options"]], "Calibration tool: check_calib": [[30, "calibration-tool-check-calib"]], "options:": [[30, "options"], [38, "options"]], "Preprocessing tool: detector2nexus": [[31, "preprocessing-tool-detector2nexus"]], "Integration tool: diff_map": [[32, "integration-tool-diff-map"]], "Bugs:": [[32, "bugs"]], "Integration tool: diff_tomo": [[33, "integration-tool-diff-tomo"]], "NAME": [[34, "name"], [40, "name"]], "DESCRIPTION": [[34, "description"], [40, "description"], [43, "description"]], "positional arguments:": [[34, "positional-arguments"], [36, "positional-arguments"], [39, "positional-arguments"], [40, "positional-arguments"], [43, "positional-arguments"]], "optional arguments:": [[34, "optional-arguments"], [36, "optional-arguments"], [39, "optional-arguments"], [40, "optional-arguments"], [43, "optional-arguments"]], "Single crystal tool: peakfinder": [[35, "single-crystal-tool-peakfinder"]], "Main arguments:": [[35, "main-arguments"], [47, "main-arguments"]], "Scan options:": [[35, "scan-options"]], "Experimental setup options:": [[35, "experimental-setup-options"], [47, "experimental-setup-options"]], "Sigma-clipping options:": [[35, "sigma-clipping-options"], [47, "sigma-clipping-options"]], "Peak finding options:": [[35, "peak-finding-options"]], "Opencl setup options:": [[35, "opencl-setup-options"], [47, "opencl-setup-options"]], "Preprocessing tool: pyFAI-average": [[36, "preprocessing-tool-pyfai-average"]], "pyFAI-benchmark": [[37, "pyfai-benchmark"]], "Usage": [[37, "usage"], [42, "usage"]], "Calibration tool: pyFAI-calib": [[38, "calibration-tool-pyfai-calib"]], "Tips & Tricks": [[38, "tips-tricks"], [39, "tips-tricks"]], "Example of usage:": [[38, "example-of-usage"]], "Pilatus 1M image of Silver Behenate taken at ESRF-BM26:": [[38, "pilatus-1m-image-of-silver-behenate-taken-at-esrf-bm26"]], "Half a FReLoN CCD image of Lantanide hexaboride taken at ESRF-ID11:": [[38, "half-a-frelon-ccd-image-of-lantanide-hexaboride-taken-at-esrf-id11"]], "Calibration tool: pyFAI-calib2": [[39, "calibration-tool-pyfai-calib2"]], "Mask generation tool: pyFAI-drawmask": [[41, "mask-generation-tool-pyfai-drawmask"]], "Integration tool: pyFAI-integrate": [[42, "integration-tool-pyfai-integrate"]], "Tips & Tricks:": [[42, "tips-tricks"]], "Calibration tool: pyFAI-recalib": [[43, "calibration-tool-pyfai-recalib"]], "Integration tool: pyFAI-saxs": [[44, "integration-tool-pyfai-saxs"]], "Integration tool: pyFAI-waxs": [[45, "integration-tool-pyfai-waxs"]], "Application manuals": [[46, "application-manuals"]], "Specific tools and deprecated scripts": [[46, "specific-tools-and-deprecated-scripts"]], "Single crystal tool: sparsify-Bragg": [[47, "single-crystal-tool-sparsify-bragg"]], "Installation": [[48, "installation"]], "Hardware requirement": [[48, "hardware-requirement"]], "Dependencies": [[48, "dependencies"]], "Build dependencies:": [[48, "build-dependencies"]], "Building procedure": [[48, "building-procedure"], [53, "building-procedure"]], "Detailed installation procedure": [[48, "detailed-installation-procedure"]], "Test suites": [[48, "test-suites"], [53, "test-suites"]], "Environment variables": [[48, "environment-variables"]], "Installation procedure on Linux": [[49, "installation-procedure-on-linux"]], "Installation procedure on Debian/Ubuntu": [[49, "installation-procedure-on-debian-ubuntu"]], "From silx repository": [[49, "from-silx-repository"]], "Build from sources": [[49, "build-from-sources"]], "Installation procedure on other linux distibution": [[49, "installation-procedure-on-other-linux-distibution"]], "Installation procedure on MacOSX": [[50, "installation-procedure-on-macosx"]], "Install Python3:": [[50, "install-python3"]], "Using a virtual environment:": [[50, "using-a-virtual-environment"]], "Installation from sources": [[50, "installation-from-sources"]], "About OpenMP": [[50, "about-openmp"]], "Using Xcode": [[50, "using-xcode"]], "Using gcc or clang": [[50, "using-gcc-or-clang"]], "Installation procedure on Windows": [[51, "installation-procedure-on-windows"]], "Get Python": [[51, "get-python"]], "Install PIP": [[51, "install-pip"]], "Install pyFAI via PIP": [[51, "install-pyfai-via-pip"]], "Using Christoph Gohlke repository": [[51, "using-christoph-gohlke-repository"]], "Install pyFAI from sources": [[51, "install-pyfai-from-sources"]], "Troubleshooting": [[51, "troubleshooting"]], "Side-by-side error": [[51, "side-by-side-error"]], "Performances": [[52, "performances"]], "Project": [[53, "project"]], "Programming language": [[53, "programming-language"]], "Repository": [[53, "repository"]], "Getting help": [[53, "getting-help"]], "Run dependencies": [[53, "run-dependencies"]], "Build dependencies": [[53, "build-dependencies"]], "As most of the Python projects:": [[53, "as-most-of-the-python-projects"]], "To run the test an internet connection is needed as 200MB of test images will be downloaded.": [[53, "to-run-the-test-an-internet-connection-is-needed-as-200mb-of-test-images-will-be-downloaded"]], "Continuous integration": [[53, "continuous-integration"]], "On Debian 8 - Jessie": [[53, "on-debian-8-jessie"]], "Linux": [[53, "linux"]], "AppVeyor": [[53, "appveyor"]], "List of contributors in code": [[53, "list-of-contributors-in-code"]], "List of other contributors (ideas or code)": [[53, "list-of-other-contributors-ideas-or-code"]], "List of supporters": [[53, "list-of-supporters"]], "Publications about pyFAI": [[54, "publications-about-pyfai"]], "General introduction": [[55, "general-introduction"]], "Python Fast Azimuthal Integration": [[55, "python-fast-azimuthal-integration"]], "Introduction": [[55, "introduction"]], "Experiment description": [[55, "experiment-description"]], "Geometry conversion": [[55, "geometry-conversion"]], "PyFAI executables": [[55, "pyfai-executables"]], "Python library": [[55, "python-library"]], "Regrouping mechanism": [[55, "regrouping-mechanism"]], "Pixel splitting algorithm": [[55, "pixel-splitting-algorithm"]], "Performances and migration to native code": [[55, "performances-and-migration-to-native-code"]], "Parallel implementation": [[55, "parallel-implementation"]], "Related Work": [[55, "related-work"]], "Acknowledgments": [[55, "acknowledgments"]], "Calibration of a diffraction setup using the Command Line Interface (CLI)": [[56, "calibration-of-a-diffraction-setup-using-the-command-line-interface-cli"]], "Review your calibration image": [[56, "review-your-calibration-image"]], "Get all additional data": [[56, "get-all-additional-data"]], "Start pyFAI-calib": [[56, "start-pyfai-calib"]], "Pick peaks": [[56, "pick-peaks"]], "Review the group of peaks": [[56, "review-the-group-of-peaks"]], "Acquire some more control points": [[56, "acquire-some-more-control-points"]], "Visualize the integrated patterns": [[56, "visualize-the-integrated-patterns"], [62, "visualize-the-integrated-patterns"]], "Quit": [[56, "quit"]], "Calibration of a diffraction setup using the Graphical User Interface (GUI)": [[57, "calibration-of-a-diffraction-setup-using-the-graphical-user-interface-gui"]], "Video": [[57, "video"]], "Experiment settings": [[57, "experiment-settings"]], "Defining the mask": [[57, "defining-the-mask"]], "Peak-picking and ring assignment": [[57, "peak-picking-and-ring-assignment"]], "Geometry fitting": [[57, "geometry-fitting"]], "3D rendering": [[57, "d-rendering"]], "Automatic peak-extraction": [[57, "automatic-peak-extraction"]], "Cake and Integration": [[57, "cake-and-integration"]], "Feedback from integrated result to improve the mask": [[57, "feedback-from-integrated-result-to-improve-the-mask"]], "Advanced video tutorial": [[57, "advanced-video-tutorial"]], "Calibration of a diffraction setup using Jupyter notebooks": [[58, "Calibration-of-a-diffraction-setup-using-Jupyter-notebooks"]], "Cookbook recipes": [[59, "cookbook-recipes"]], "Integration with Python": [[60, "Integration-with-Python"]], "Performing azimuthal integration with pyFAI of a bunch of images": [[60, "Performing-azimuthal-integration-with-pyFAI-of-a-bunch-of-images"]], "Basic usage of pyFAI": [[60, "Basic-usage-of-pyFAI"]], "Azimuthal averaging using pyFAI": [[60, "Azimuthal-averaging-using-pyFAI"]], "Azimuthal regrouping using pyFAI": [[60, "Azimuthal-regrouping-using-pyFAI"]], "Using some advanced features of Jupyter Notebooks": [[60, "Using-some-advanced-features-of-Jupyter-Notebooks"]], "Initialization of the notebook for matplotlib integration:": [[60, "Initialization-of-the-notebook-for-matplotlib-integration:"]], "Visualization of different types of results previously calculated": [[60, "Visualization-of-different-types-of-results-previously-calculated"]], "Performing the azimutal integration from shell scripts": [[61, "Performing-the-azimutal-integration-from-shell-scripts"]], "Azimuthal integration for powder diffraction": [[61, "Azimuthal-integration-for-powder-diffraction"]], "Azimuthal integration for small angle data": [[61, "Azimuthal-integration-for-small-angle-data"]], "Common tool for azimuthal intration": [[61, "Common-tool-for-azimuthal-intration"]], "Azimuthal integration using the graphical user interface": [[62, "azimuthal-integration-using-the-graphical-user-interface"]], "Look at your integrated patterns": [[62, "look-at-your-integrated-patterns"]], "Integrate a bunch of images": [[62, "integrate-a-bunch-of-images"]], "Start pyFAI-intgrate": [[62, "start-pyfai-intgrate"]], "Set the geometry": [[62, "set-the-geometry"]], "Azimuthal integration options": [[62, "azimuthal-integration-options"]], "Select the device for processing": [[62, "select-the-device-for-processing"]], "Run it again to perform caking": [[62, "run-it-again-to-perform-caking"]], "Example of usage": [[63, "example-of-usage"]], "Selection of a calibrant": [[64, "Selection-of-a-calibrant"]], "Experimental setup": [[64, "Experimental-setup"]], "Define the detector": [[64, "Define-the-detector"]], "Select reference materials": [[64, "Select-reference-materials"]], "Short distance images": [[64, "Short-distance-images"]], "Long distance images": [[64, "Long-distance-images"]], "Integration of the pattern for the two extreme cases": [[64, "Integration-of-the-pattern-for-the-two-extreme-cases"]], "Creation of a new calibrant": [[65, "Creation-of-a-new-calibrant"], [68, "Creation-of-a-new-calibrant"]], "Calibrant selection and generation": [[66, "calibrant-selection-and-generation"]], "Creation of a calibrant file": [[67, "Creation-of-a-calibrant-file"]], "Content of the file": [[67, "Content-of-the-file"]], "The Cell class": [[67, "The-Cell-class"]], "Specific constructors": [[67, "Specific-constructors"]], "Other Examples: LaB6": [[67, "Other-Examples:-LaB6"]], "Other Examples: Silicon": [[67, "Other-Examples:-Silicon"]], "Selection rules": [[67, "Selection-rules"]], "CCD calibration": [[69, "CCD-calibration"]], "Peak picking": [[69, "Peak-picking"], [72, "Peak-picking"], [73, "Peak-picking"]], "Precise peak extraction is performed using a second order tailor expansion": [[69, "Precise-peak-extraction-is-performed-using-a-second-order-tailor-expansion"]], "Pair-wise distribution function": [[69, "Pair-wise-distribution-function"]], "Estimation of the pixel size:": [[69, "Estimation-of-the-pixel-size:"]], "Optimization of the pixel position": [[69, "Optimization-of-the-pixel-position"]], "Interpolation of the fitted data": [[69, "Interpolation-of-the-fitted-data"]], "Multivariate data interpolation (griddata)": [[69, "Multivariate-data-interpolation-(griddata)"]], "Saving the distortion correction arrays to a detector": [[69, "Saving-the-distortion-correction-arrays-to-a-detector"]], "Validation of the distortion correction": [[69, "Validation-of-the-distortion-correction"]], "Detector distortion corrections": [[70, "Detector-distortion-corrections"]], "Detector definitions": [[70, "Detector-definitions"]], "Defining a detector from a spline file": [[70, "Defining-a-detector-from-a-spline-file"]], "Visualizing the mask": [[70, "Visualizing-the-mask"]], "Detector definition files as NeXus files": [[70, "Detector-definition-files-as-NeXus-files"]], "Modify a detector and saving": [[70, "Modify-a-detector-and-saving"]], "Distortion correction": [[70, "Distortion-correction"]], "FReLoN detector": [[70, "FReLoN-detector"]], "Example of Pixel-detectors:": [[70, "Example-of-Pixel-detectors:"]], "XPad Flat detector": [[70, "XPad-Flat-detector"]], "WOS XPad detector": [[70, "WOS-XPad-detector"]], "Distortion of Eiger2 CdTe detector from ID11": [[71, "Distortion-of-Eiger2-CdTe-detector-from-ID11"]], "Preprocessing": [[71, "Preprocessing"]], "Define the right mask": [[71, "Define-the-right-mask"]], "Grid spot position measurement.": [[71, "Grid-spot-position-measurement."]], "Peak position measurement": [[71, "Peak-position-measurement"]], "Grid assignment": [[71, "Grid-assignment"], [72, "Grid-assignment"], [73, "Grid-assignment"]], "Reconstruction of the pixel position": [[71, "Reconstruction-of-the-pixel-position"], [72, "Reconstruction-of-the-pixel-position"], [73, "Reconstruction-of-the-pixel-position"]], "Validation of the distortion": [[71, "Validation-of-the-distortion"]], "Calibration of a very large Pilatus detector with overlapping grid position": [[72, "Calibration-of-a-very-large-Pilatus-detector-with-overlapping-grid-position"]], "Image processing": [[72, "Image-processing"], [73, "Image-processing"]], "Fit the grid on a reference module for each position": [[72, "Fit-the-grid-on-a-reference-module-for-each-position"]], "Fit all modules of the central grid position:": [[72, "Fit-all-modules-of-the-central-grid-position:"]], "Fit all modules of the left grid position:": [[72, "Fit-all-modules-of-the-left-grid-position:"]], "Fit all modules of the right grid position:": [[72, "Fit-all-modules-of-the-right-grid-position:"]], "Fit all modules togeather": [[72, "Fit-all-modules-togeather"]], "Calibration of the pixel position for a Pilatus detector": [[73, "Calibration-of-the-pixel-position-for-a-Pilatus-detector"]], "Update the detector and save it in HDF5": [[73, "Update-the-detector-and-save-it-in-HDF5"]], "Validation of the result": [[73, "Validation-of-the-result"]], "Detector geometric distortions and corrections": [[74, "detector-geometric-distortions-and-corrections"]], "Extracting ellipse parmeters from rings": [[75, "Extracting-ellipse-parmeters-from-rings"]], "Geometries in pyFAI": [[76, "Geometries-in-pyFAI"]], "Demonstration": [[76, "Demonstration"]], "Translation orthogonal to the beam: poni1 and poni2": [[76, "Translation-orthogonal-to-the-beam:-poni1-and-poni2"]], "Investigation on the rotations:": [[76, "Investigation-on-the-rotations:"]], "Fitting wavelength with multiple sample-detector distances": [[77, "Fitting-wavelength-with-multiple-sample-detector-distances"]], "Loading data": [[77, "Loading-data"]], "Automatic calibration": [[77, "Automatic-calibration"]], "Sample stage setup": [[77, "Sample-stage-setup"]], "Conclusions": [[77, "Conclusions"]], "Calibration of a 2 theta arm with a Pilatus 100k detector": [[78, "Calibration-of-a-2-theta-arm-with-a-Pilatus-100k-detector"]], "Initialization and loading of the libraries": [[78, "Initialization-and-loading-of-the-libraries"]], "Display of an image and its headers": [[78, "Display-of-an-image-and-its-headers"]], "Definition of the geometry transformation": [[78, "Definition-of-the-geometry-transformation"]], "Evaluation of the peak-profile": [[78, "Evaluation-of-the-peak-profile"]], "ImXPAD S540 detector at D2AM": [[79, "ImXPAD-S540-detector-at-D2AM"]], "Calibration of a detector on a translation table": [[80, "Calibration-of-a-detector-on-a-translation-table"]], "Goniometer and translation table calibration": [[81, "goniometer-and-translation-table-calibration"]], "Inpainting missing data": [[82, "Inpainting-missing-data"]], "Creation of the image": [[82, "Creation-of-the-image"]], "Inpainting": [[82, "Inpainting"]], "Benchmarking and optimization of the parameters": [[82, "Benchmarking-and-optimization-of-the-parameters"]], "Introduction to the tutorials": [[83, "Introduction-to-the-tutorials"]], "The Jupyter notebook": [[83, "The-Jupyter-notebook"]], "Getting access to the notebook:": [[83, "Getting-access-to-the-notebook:"]], "For ESRF staff and users": [[83, "For-ESRF-staff-and-users"]], "Jupyter in the cloud": [[83, "Jupyter-in-the-cloud"]], "Other cases": [[83, "Other-cases"]], "Getting trained in using the notebook": [[83, "Getting-trained-in-using-the-notebook"]], "Introduction to diffraction image analysis using the notebook": [[83, "Introduction-to-diffraction-image-analysis-using-the-notebook"]], "Load and display diffraction images": [[83, "Load-and-display-diffraction-images"]], "1D azimuthal integration": [[83, "1D-azimuthal-integration"]], "2D integration or Caking": [[83, "2D-integration-or-Caking"]], "Radial integration": [[83, "Radial-integration"]], "Integration of a bunch of files using pyFAI": [[83, "Integration-of-a-bunch-of-files-using-pyFAI"]], "Azimuthal averaging in log-scaled bins": [[84, "Azimuthal-averaging-in-log-scaled-bins"]], "Guinier-like scatterer image": [[84, "Guinier-like-scatterer-image"]], "Selection of the log-space rebinning": [[84, "Selection-of-the-log-space-rebinning"]], "Creation of a new radial unit": [[84, "Creation-of-a-new-radial-unit"]], "Demo of usage of the MultiGeometry class of pyFAI": [[85, "Demo-of-usage-of-the-MultiGeometry-class-of-pyFAI"]], "Generation of diffraction images": [[85, "Generation-of-diffraction-images"]], "Translation of the detector along the vertical axis": [[85, "Translation-of-the-detector-along-the-vertical-axis"]], "MultiGeometry integrator": [[85, "MultiGeometry-integrator"]], "Rotation of the detector": [[85, "Rotation-of-the-detector"]], "Creation of diffraction images": [[85, "Creation-of-diffraction-images"]], "Creation of the MultiGeometry": [[85, "Creation-of-the-MultiGeometry"]], "How to fill-up gaps in arrays of pixel detectors during 2D integration": [[85, "How-to-fill-up-gaps-in-arrays-of-pixel-detectors-during-2D-integration"]], "Effect of pixel splitting on 2D integration": [[86, "Effect-of-pixel-splitting-on-2D-integration"]], "Re-calibration of a diffraction image with Jupyter": [[87, "Re-calibration-of-a-diffraction-image-with-Jupyter"]], "Implementation of PeakFinder8 on GPU": [[88, "Implementation-of-PeakFinder8-on-GPU"]], "Comparison with the original \u201cpeakfinder8\u201d": [[88, "Comparison-with-the-original-\u201cpeakfinder8\u201d"]], "Signal separation between amorphous and crystalline phases": [[89, "Signal-separation-between-amorphous-and-crystalline-phases"]], "0. 1D and 2D integration": [[89, "0.-1D-and-2D-integration"]], "1. Separation based on 2D integration": [[89, "1.-Separation-based-on-2D-integration"]], "2. Separation based on 1D integration:": [[89, "2.-Separation-based-on-1D-integration:"]], "3. Rebuild the isotropic and anisotropic contribution": [[89, "3.-Rebuild-the-isotropic-and-anisotropic-contribution"]], "4. Implementation of sigma-clipping using pure 1D integrators.": [[89, "4.-Implementation-of-sigma-clipping-using-pure-1D-integrators."]], "5. Towards lossy compression of single crystal diffraction data": [[89, "5.-Towards-lossy-compression-of-single-crystal-diffraction-data"]], "6. Conclusion": [[89, "6.-Conclusion"]], "Wilson plots generated from sparse datasets": [[90, "Wilson-plots-generated-from-sparse-datasets"]], "Signal separation": [[91, "signal-separation"]], "Calibration of the 9-Mythen detector at the Cristal beamline at Soleil": [[92, "Calibration-of-the-9-Mythen-detector-at-the-Cristal-beamline-at-Soleil"]], "Module 1": [[92, "Module-1"]], "All other Modules": [[92, "All-other-Modules"]], "Use the negative part of the spectum \u2026": [[92, "Use-the-negative-part-of-the-spectum-\u2026"]], "Discard wronly assigned peaks": [[92, "Discard-wronly-assigned-peaks"]], "Overlay of the differents results": [[92, "Overlay-of-the-differents-results"]], "Multi-Gonio fit": [[92, "Multi-Gonio-fit"]], "Using pyFAI with data from Synchrotron Soleil": [[95, "using-pyfai-with-data-from-synchrotron-soleil"]], "Parallax effect": [[96, "Parallax-effect"]], "Deconvolution of the Thickness effect": [[97, "Deconvolution-of-the-Thickness-effect"]], "Validation using the goniometer refinement": [[97, "Validation-using-the-goniometer-refinement"]], "Conclusion on deconvolution using least-squares:": [[97, "Conclusion-on-deconvolution-using-least-squares:"]], "Pseudo inverse with positivitiy constrain and poissonian noise (MLEM)": [[97, "Pseudo-inverse-with-positivitiy-constrain-and-poissonian-noise-(MLEM)"], [100, "Pseudo-inverse-with-positivitiy-constrain-and-poissonian-noise-(MLEM)"]], "Pilatus on a goniometer at ID28": [[98, "Pilatus-on-a-goniometer-at-ID28"]], "Peak profile": [[98, "Peak-profile"]], "Conclusion:": [[98, "Conclusion:"]], "Thick detectors": [[99, "thick-detectors"]], "Modeling of the thickness of the sensor": [[100, "Modeling-of-the-thickness-of-the-sensor"]], "Absorption coeficient at 17.8 keV": [[100, "Absorption-coeficient-at-17.8-keV"]], "Modeling of the detector:": [[100, "Modeling-of-the-detector:"]], "Validation of the CSR matrix obtained:": [[100, "Validation-of-the-CSR-matrix-obtained:"]], "Least squares refinement of the pseudo-inverse": [[100, "Least-squares-refinement-of-the-pseudo-inverse"]], "Conclusion of the raytracing part:": [[100, "Conclusion-of-the-raytracing-part:"]], "Error model validator": [[101, "Error-model-validator"]], "Variance of SAXS data": [[102, "Variance-of-SAXS-data"]], "System under study": [[102, "System-under-study"]], "Construction of a synthetic dataset": [[102, "Construction-of-a-synthetic-dataset"]], "Poisson distribution:": [[102, "Poisson-distribution:"]], "Validation of the Poisson distribution.": [[102, "Validation-of-the-Poisson-distribution."]], "Integration of images in the SAXS appoximation:": [[102, "Integration-of-images-in-the-SAXS-appoximation:"]], "Integration of images with solid angle correction/polarization correction": [[102, "Integration-of-images-with-solid-angle-correction/polarization-correction"]], "Introducing the new generation of azimuthal integrator \u2026 in production since 0.20": [[102, 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