Coevolution analysis

A method on the alignment provides an interface to the simpler (and yet robust and fast) methods for estimating coevolution. The default measure is normalised mutual information (NMI).

Display coevolution as a heatmap

Using the drawable argument causes the returned object to have a drawable attribute (type Drawable which has show() and write() methods), for the corresponding plot types – a heatmap in this case.

Display coevolution scores as a Violin plot

Display coevolution scores as a Boxplot