Apply a non-stationary nucleotide model to an alignment with a tree

We analyse an alignment with sequences from 6 primates.

Specify the tree via a tree instance

Specify the tree via a path.

Apply the model to an alignment

In the above, no value is shown for unique_Q. This can happen because of numerical precision issues.

Note

in the display of the lf below, the “length” parameter is not the ENS. It is, instead, just a scalar.