make_aligned_seqs

make_aligned_seqs(data, moltype=None, array_align=True, label_to_name=None, info=None, source=None, **kw)

Initialize an aligned collection of sequences.

Parameters:
  • data – sequences

  • moltype – the moltype, eg DNA, PROTEIN, ‘dna’, ‘protein’

  • array_align (bool) – if True, returns ArrayAlignment, otherwise an annotatable Alignment

  • label_to_name – function for converting original name into another name.

  • info – a dict from which to make an info object

  • source – origins of this data, defaults to ‘unknown’. Converted to a string and added to info[“source”].

  • **kw – other keyword arguments passed to alignment class