.. _io_registry: ************************************ I/O Registry (`astropy.io.registry`) ************************************ .. note:: The I/O registry is only meant to be used directly by users who want to define their own custom readers/writers. Users who want to find out more about what built-in formats are supported by :class:`~astropy.table.Table` by default should see :ref:`table_io`. Likewise :ref:`cosmology_io` for built-in formats supported by :class:`~astropy.cosmology.Cosmology`. No built-in formats are currently defined for :class:`~astropy.nddata.NDData`, but this will be added in future. Introduction ============ The I/O registry is a submodule used to define the readers/writers available for the :class:`~astropy.table.Table`, :class:`~astropy.nddata.NDData`, and :class:`~astropy.cosmology.Cosmology` classes. Custom Read/Write Functions =========================== This section demonstrates how to create a custom reader/writer. A reader is written as a function that can take any arguments except ``format`` (which is needed when manually specifying the format — see below) and returns an instance of the :class:`~astropy.table.Table` or :class:`~astropy.nddata.NDData` classes (or subclasses). Examples -------- .. EXAMPLE START Using astropy.io.registry to Create a Custom Reader/Writer Here we assume that we are trying to write a reader/writer for the :class:`~astropy.table.Table` class:: >>> from astropy.table import Table >>> def my_table_reader(filename, some_option=1): ... # Read in the table by any means necessary ... return table # should be an instance of Table Such a function can then be registered with the I/O registry:: from astropy.io import registry registry.register_reader('my-table-format', Table, my_table_reader) where the first argument is the name of the format, the second argument is the class that the function returns an instance for, and the third argument is the reader itself. We can then read in a table with:: d = Table.read('my_table_file.mtf', format='my-table-format') In practice, it would be nice to have the ``read`` method automatically identify that this file is in the ``my-table-format`` format, so we can construct a function that can recognize these files, which we refer to here as an *identifier* function. An identifier function should take a first argument that is a string which indicates whether the identifier is being called from ``read`` or ``write``, and should then accept an arbitrary number of positional and keyword arguments via ``*args`` and ``**kwargs``, which are the arguments passed to the ``read`` method. In the above case, we can write a function that only looks at filenames (but in practice, this function could even look at the first few bytes of the file, for example). The only requirement for the identifier function is that it return a boolean indicating whether the input matches that expected for the format. In our example, we want to automatically recognize files with filenames ending in ``.mtf`` as being in the ``my-table-format`` format:: import os def identify_mtf(origin, *args, **kwargs): return (isinstance(args[0], str) and os.path.splitext(args[0].lower())[1] == '.mtf') .. note:: Identifier functions should be prepared for arbitrary input — in particular, the first argument may not be a filename or file object, so it should not assume that this is the case. We then register this identifier function, similarly to the reader function:: registry.register_identifier('my-table-format', Table, identify_mtf) Having registered this function, we can then do:: t = Table.read('catalog.mtf') If multiple formats match the current input, then an exception is raised, and similarly if no format matches the current input. In that case, the format should be explicitly given with the ``format=`` keyword argument. It is also possible to create custom writers. To go with our custom reader above, we can write a custom writer:: def my_table_writer(table, filename, overwrite=False): ... # Write the table out to a file return ... # generally None, but other values are not forbidden. Writer functions should take a dataset object (either an instance of the :class:`~astropy.table.Table` or :class:`~astropy.nddata.NDData` classes or subclasses), and any number of subsequent positional and keyword arguments — although as for the reader, the ``format`` keyword argument cannot be used. We then register the writer:: registry.register_writer('my-custom-format', Table, my_table_writer) We can write the table out to a file:: t.write('catalog_new.mtf', format='my-table-format') Since we have already registered the identifier function, we can also do:: t.write('catalog_new.mtf') .. EXAMPLE END Registries, local and default ============================= .. versionchanged:: 5.0 As of Astropy 5.0 the I/O registry submodule has switched to a class-based architecture, allowing for the creation of custom registries. The three supported registry types are read-only -- :class:`~astropy.io.registry.UnifiedInputRegistry` -- write-only -- :class:`~astropy.io.registry.UnifiedOutputRegistry` -- and read/write -- :class:`~astropy.io.registry.UnifiedIORegistry`. >>> from astropy.io.registry import UnifiedIORegistry >>> example_reg = UnifiedIORegistry() >>> print([m for m in dir(example_reg) if not m.startswith("_")]) ['available_registries', 'delay_doc_updates', 'get_formats', 'get_reader', 'get_writer', 'identify_format', 'read', 'register_identifier', 'register_reader', 'register_writer', 'unregister_identifier', 'unregister_reader', 'unregister_writer', 'write'] For backward compatibility all the methods on this registry have corresponding module-level functions, which work with the default global read/write registry. These functions were used in the previous examples. This new registry is empty. >>> example_reg.get_formats() Data class Format Read Write Auto-identify float64 float64 float64 float64 float64 ---------- ------- ------- ------- ------------- We can register read / write / identify methods with this registry object: >>> example_reg.register_reader('my-table-format', Table, my_table_reader) >>> example_reg.get_formats()
Data class Format Read Write Auto-identify str5 str15 str3 str2 str2 ---------- --------------- ---- ----- ------------- Table my-table-format Yes No No What is the use of a custom registries? 1. To make read-only or write-only registries. 2. To allow for different readers for the same format. 3. To allow for an object to have different *kinds* of readers and writers. E.g. |Cosmology| which supports both file I/O and object conversion. Reference/API ============= .. automodapi:: astropy.io.registry