Here is a list of all files with brief descriptions:

[detail level 123]

► src
► hash_map
hash_fun.h
hashtable.h
► test
all.h
asserts.cpp
asserts.h
macroes.cpp
macroes.h
stdinc.h
Test.cpp
Test.h
TestCase.cpp
TestCase.h
testmain.cpp
TestQualifier.cpp
TestQualifier.h
TestRunner.cpp
TestRunner.h
TestSorter.cpp
TestSorter.h
TestSuite.cpp
TestSuite.h
TestVisitor.cpp
TestVisitor.h
Action.cpp
Action.h
ActionPrinter.cpp
ActionPrinter.h
AlexanderDualAction.cpp
AlexanderDualAction.h
AnalyzeAction.cpp
AnalyzeAction.h
Arena.cpp
Arena.h
ArenaTest.cpp
AssociatedPrimesAction.cpp
AssociatedPrimesAction.h
BigattiBaseCase.cpp
BigattiBaseCase.h
BigattiFacade.cpp
BigattiFacade.h
BigattiHilbertAlgorithm.cpp
BigattiHilbertAlgorithm.h
BigattiParams.cpp
BigattiParams.h
BigattiPivotStrategy.cpp
BigattiPivotStrategy.h
BigattiState.cpp
BigattiState.h
BigIdeal.cpp
BigIdeal.h
BigIntVector.cpp
BigIntVector.h
BigPolynomial.cpp
BigPolynomial.h
BigTermConsumer.cpp
BigTermConsumer.h
BigTermRecorder.cpp
BigTermRecorder.h
BoolParameter.cpp
BoolParameter.h
CanonicalCoefTermConsumer.cpp
CanonicalCoefTermConsumer.h
CanonicalTermConsumer.cpp
CanonicalTermConsumer.h
CliParams.cpp
CliParams.h
CoCoA4IOHandler.cpp
CoCoA4IOHandler.h
CoefBigTermConsumer.cpp
CoefBigTermConsumer.h
CoefBigTermRecorder.cpp
CoefBigTermRecorder.h
CoefTermConsumer.cpp
CoefTermConsumer.h
ColumnPrinter.cpp
ColumnPrinter.h
CommonParams.cpp
CommonParams.h
CommonParamsHelper.cpp
CommonParamsHelper.h
CountingIOHandler.cpp
CountingIOHandler.h
DataType.cpp
DataType.h
DebugAllocator.cpp
DebugAllocator.h
DebugStrategy.cpp
DebugStrategy.h
DecomRecorder.cpp
DecomRecorder.h
Deformer.cpp
Deformer.h
DimensionAction.cpp
DimensionAction.h
display.cpp
display.h	This file contains functions for printing strings to standard error
doxygen.cpp	This file contains content for the Doxygen-generated documentation that does not fit elsewhere
DynamicFrobeniusAction.cpp
DynamicFrobeniusAction.h
dynamicFrobeniusAlgorithm.cpp
dynamicFrobeniusAlgorithm.h
DynamicFrobeniusFacade.cpp
DynamicFrobeniusFacade.h
ElementDeleter.cpp
ElementDeleter.h
error.cpp
error.h
EulerAction.cpp
EulerAction.h
EulerState.cpp
EulerState.h
Facade.cpp
Facade.h
fourti2.cpp
fourti2.h
Fourti2IOHandler.cpp
Fourti2IOHandler.h
fplllIO.cpp
fplllIO.h
frobby.cpp
frobby.h
FrobbyStringStream.cpp
FrobbyStringStream.h
FrobeniusAction.cpp
FrobeniusAction.h
GenerateDataFacade.cpp
GenerateDataFacade.h
GenerateFrobeniusAction.cpp
GenerateFrobeniusAction.h
GenerateIdealAction.cpp
GenerateIdealAction.h
HashMap.h	The purpose of this file is to provide a definition of a hash map whenever possible
HashPolynomial.cpp
HashPolynomial.h
HelpAction.cpp
HelpAction.h
HilbertAction.cpp
HilbertAction.h
HilbertBasecase.cpp
HilbertBasecase.h
HilbertIndependenceConsumer.cpp
HilbertIndependenceConsumer.h
HilbertSlice.cpp
HilbertSlice.h
HilbertStrategy.cpp
HilbertStrategy.h
Ideal.cpp
Ideal.h
IdealComparator.cpp
IdealComparator.h
IdealConsolidator.cpp
IdealConsolidator.h
IdealFacade.cpp
IdealFacade.h
IdealFactory.cpp
IdealFactory.h
IdealOrderer.cpp
IdealOrderer.h
IdealTest.cpp
IdealTree.cpp
IdealTree.h
IdealWriter.cpp
IdealWriter.h
IndependenceSplitter.cpp
IndependenceSplitter.h
InputConsumer.cpp
InputConsumer.h
IntegerParameter.cpp
IntegerParameter.h
intersect.cpp
intersect.h
IntersectFacade.cpp
IntersectFacade.h
IntersectionAction.cpp
IntersectionAction.h
IOFacade.cpp
IOFacade.h
IOHandler.cpp
IOHandler.h
IOHandlerCommon.cpp
IOHandlerCommon.h
IOHandlerImpl.cpp
IOHandlerImpl.h
IOParameters.cpp
IOParameters.h
IrreducibleDecomAction.cpp
IrreducibleDecomAction.h
IrreducibleIdealSplitter.cpp
IrreducibleIdealSplitter.h
lattice.cpp
lattice.h
LatticeAlgs.cpp
LatticeAlgs.h
LatticeAnalyzeAction.cpp
LatticeAnalyzeAction.h
LatticeFacade.cpp
LatticeFacade.h
LatticeFormatAction.cpp
LatticeFormatAction.h
LibAlexanderDualTest.cpp
LibAssociatedPrimesTest.cpp
LibDimensionTest.cpp
LibHilbertPoincareTest.cpp
LibIrreducibleDecomTest.cpp
LibMaxStdTest.cpp
LibPrimaryDecomTest.cpp
LibStdProgramTest.cpp
LibTest.cpp
LibTest.h
LocalArray.cpp
LocalArray.h
Macaulay2IOHandler.cpp
Macaulay2IOHandler.h
main.cpp
main.h
Matrix.cpp
Matrix.h
MatrixTest.cpp
MaximalStandardAction.cpp
MaximalStandardAction.h
Minimizer.cpp
Minimizer.h
MonosIOHandler.cpp
MonosIOHandler.h
MsmSlice.cpp
MsmSlice.h
MsmStrategy.cpp
MsmStrategy.h
NameFactory.cpp
NameFactory.h
NewMonosIOHandler.cpp
NewMonosIOHandler.h
NullCoefTermConsumer.cpp
NullCoefTermConsumer.h
NullIOHandler.cpp
NullIOHandler.h
NullTermConsumer.cpp
NullTermConsumer.h
ObjectCache.cpp
ObjectCache.h
OptimizeAction.cpp
OptimizeAction.h
OptimizeStrategy.cpp
OptimizeStrategy.h
OptimizeStrategyTest.cpp
OptSliceParams.h
Parameter.cpp
Parameter.h
ParameterGroup.cpp
ParameterGroup.h
Partition.cpp
Partition.h
PivotEulerAlg.cpp
PivotEulerAlg.h
PivotStrategy.cpp
PivotStrategy.h
Polynomial.cpp
Polynomial.h
PolynomialConsolidator.cpp
PolynomialConsolidator.h
PolynomialFacade.cpp
PolynomialFacade.h
PolynomialFactory.cpp
PolynomialFactory.h
PolyTransformAction.cpp
PolyTransformAction.h
PolyWriter.cpp
PolyWriter.h
PrimaryDecomAction.cpp
PrimaryDecomAction.h
Projection.cpp
Projection.h
randomDataGenerators.cpp
randomDataGenerators.h	This file contains functions that generate data
RawSquareFreeIdeal.cpp
RawSquareFreeIdeal.h
RawSquareFreeIdealTest.cpp
RawSquareFreeTerm.cpp
RawSquareFreeTerm.h
RawSquareFreeTermTest.cpp
SatBinomConsumer.cpp
SatBinomConsumer.h
SatBinomIdeal.cpp
SatBinomIdeal.h
SatBinomRecorder.cpp
SatBinomRecorder.h
Scanner.cpp
Scanner.h
ScarfFacade.cpp
ScarfFacade.h
ScarfHilbertAlgorithm.cpp
ScarfHilbertAlgorithm.h
ScarfParams.cpp
ScarfParams.h
SingularIOHandler.cpp
SingularIOHandler.h
SizeMaxIndepSetAlg.cpp
SizeMaxIndepSetAlg.h
Slice.cpp
Slice.h
SliceFacade.cpp
SliceFacade.h
SliceLikeParams.cpp
SliceLikeParams.h
SliceParameters.cpp
SliceParameters.h
SliceParams.cpp
SliceParams.h
SliceStrategy.cpp
SliceStrategy.h
SliceStrategyCommon.cpp
SliceStrategyCommon.h
SplitStrategy.cpp
SplitStrategy.h
SquareFreeIdeal.cpp
SquareFreeIdeal.h
StatisticsStrategy.cpp
StatisticsStrategy.h
stdinc.h	This header file includes common definitions and is included as the first line of code in every implementation file (.cpp)
StringParameter.cpp
StringParameter.h
Task.cpp
Task.h
TaskEngine.cpp
TaskEngine.h
Term.cpp
Term.h
TermConsumer.cpp
TermConsumer.h
TermExtra.cpp
TermExtra.h
TermGrader.cpp
TermGrader.h
TermGraderTest.cpp
TermIgnorer.h
TermPredicate.cpp
TermPredicate.h
TermTest.cpp
TermTranslator.cpp
TermTranslator.h
TermTranslatorTest.cpp
TestAction.cpp
TestAction.h
tests.h
Timer.cpp
Timer.h
TotalDegreeCoefTermConsumer.cpp
TotalDegreeCoefTermConsumer.h
TransformAction.cpp
TransformAction.h
TranslatingCoefTermConsumer.cpp
TranslatingCoefTermConsumer.h
TranslatingTermConsumer.cpp
TranslatingTermConsumer.h
UniHashPolynomial.cpp
UniHashPolynomial.h
VarNames.cpp
VarNames.h
VarSorter.cpp
VarSorter.h