#include <Table.h>

Inheritance diagram for CCfits::Table:

Classes
class	NoSuchColumn
	Exception to be thrown on a failure to retrieve a column specified either by name or index number. More...

Public Member Functions
	Table (const Table &right)
	copy constructor

virtual	~Table ()
	destructor

virtual ColMap &	column ()
	return a reference to the multimap containing the columns. More...

virtual const ColMap &	column () const
	return a reference to the multimap containing the columns. More...

virtual Column &	column (const String &colName, bool caseSensitive=true) const
	return a reference to a Table column specified by name. More...

virtual Column &	column (int colIndex) const
	return a reference to the column identified by colIndex More...

virtual void	copyColumn (const Column &inColumn, int colIndx, bool insertNewCol=true)
	copy a column (from different or same HDU and file) into an existing table HDU. More...

virtual void	deleteColumn (const String &columnName)
	delete a column in a Table extension by name. More...

void	deleteRows (const std::vector< long > &rowList)
	delete a set of rows in the table specified by an input array. More...

void	deleteRows (long first, long number=1)
	delete a range of rows in a table. More...

virtual long	getRowsize () const
	return the optimal number of rows to read or write at a time More...

void	insertRows (long first, long number=1)
	insert empty rows into the table More...

virtual int	numCols () const
	return the number of Columns in the Table (the TFIELDS keyword).

virtual long	rows () const
	return the number of rows in the table (NAXIS2).

void	rows (long numRows)
	set the number of rows in the Table.

void	updateRows ()
	update the number of rows in the table More...

Public Member Functions inherited from CCfits::ExtHDU
	ExtHDU (const ExtHDU &right)
	copy constructor

virtual	~ExtHDU ()
	destructor

virtual void	addColumn (ValueType type, const String &columnName, long repeatWidth, const String &colUnit=String(""), long decimals=-1, size_t columnNumber=0)
	add a new column to an existing table HDU. More...

virtual HDU *	clone (FITS *p) const =0
	virtual copy constructor

bool	isCompressed () const
	return true if image is stored using compression. More...

virtual void	makeThisCurrent () const
	move the fitsfile pointer to this current HDU. More...

const String &	name () const
	return the name of the extension.

template<typename S >
void	read (std::valarray< S > &image)
	Read image data into container. More...

template<typename S >
void	read (std::valarray< S > &image, const std::vector< long > &first, long nElements)
	read an image section starting at a location specified by an n-tuple

template<typename S >
void	read (std::valarray< S > &image, const std::vector< long > &first, long nElements, S *nullValue)
	read part of an image array, processing null values. More...

template<typename S >
void	read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride)
	read an image subset

template<typename S >
void	read (std::valarray< S > &image, const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::vector< long > &stride, S *nullValue)
	read an image subset into valarray image, processing null values More...

template<typename S >
void	read (std::valarray< S > &image, long first, long nElements)
	read an image section starting at a specified pixel

template<typename S >
void	read (std::valarray< S > &image, long first, long nElements, S *nullValue)
	read part of an image array, processing null values. More...

virtual void	readData (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())=0
	read data from HDU depending on readFlag and keys.

int	version () const
	return the extension version number.

void	version (int value)
	set the extension version number

template<typename S >
void	write (const std::vector< long > &first, long nElements, const std::valarray< S > &data)
	write array starting from specified n-tuple, without undefined data processing

template<typename S >
void	write (const std::vector< long > &first, long nElements, const std::valarray< S > &data, S *nullValue)
	Write a set of pixels to an image extension with the first pixel specified by an n-tuple, processing undefined data. More...

template<typename S >
void	write (const std::vector< long > &firstVertex, const std::vector< long > &lastVertex, const std::valarray< S > &data)
	write a subset (generalize slice) of data to the image More...

template<typename S >
void	write (long first, long nElements, const std::valarray< S > &data)
	write array starting from specified pixel number, without undefined data processing

template<typename S >
void	write (long first, long nElements, const std::valarray< S > &data, S *nullValue)
	write array to image starting with a specified pixel and allowing undefined data to be processed More...

Public Member Functions inherited from CCfits::HDU
	HDU (const HDU &right)
	copy constructor

Keyword *	addKey (const Keyword *inKeyword)
	create a copy of an existing Keyword and add to HDU More...

template<typename T >
Keyword &	addKey (const String &name, T val, const String &comment, bool isLongStr=false)
	create a new keyword in the HDU with specified value and comment fields More...

long	axes () const
	return the number of axes in the HDU data section (always 2 for tables).

long	axis (size_t index) const
	return the size of axis numbered index [zero based]. More...

long	bitpix () const
	return the data type keyword. More...

const string &	comment () const
	return the comment string previously read by getComment()

void	copyAllKeys (const HDU *inHdu, const std::vector< int > &keyCategories=std::vector< int >())
	copy all keys from another header More...

void	deleteKey (const String &doomed)
	delete a keyword from the header More...

fitsfile *	fitsPointer () const
	return the fitsfile pointer for the FITS object containing the HDU

std::pair< unsigned long, unsigned long >	getChecksum () const
	compute and return the checksum values for the HDU without creating or modifying the CHECKSUM/DATASUM keywords. More...

const String &	getComments ()
	read the comments from the HDU and add it to the FITS object. More...

const String &	getHistory ()
	read the history information from the HDU and add it to the FITS object. More...

const string &	history () const
	return the history string previously read by getHistory()

int	index () const
	return the HDU number

void	index (int value)
	set the HDU number

std::map< String, Keyword * > &	keyWord ()
	return the associative array containing the HDU keywords so far read.

const std::map< string, Keyword * > &	keyWord () const
	return the associative array containing the HDU Keywords that have been read so far.

Keyword &	keyWord (const String &keyName)
	return a (previously read) keyword from the HDU object.

const Keyword &	keyWord (const string &keyname) const
	return a (previously read) keyword from the HDU object. const version

bool	operator!= (const HDU &right) const
	inequality operator

bool	operator== (const HDU &right) const
	equality operator

FITS *	parent () const
	return reference to the pointer representing the FITS object containing the HDU

void	readAllKeys (const std::vector< int > &keyCategories=std::vector< int >())
	read all of the keys in the header More...

template<typename T >
void	readKey (const String &keyName, T &val)
	read a keyword of specified type from the header of a disk FITS file and return its value. More...

template<typename T >
void	readKeys (std::vector< String > &keyNames, std::vector< T > &vals)
	read a set of specified keywords of the same data type from the header of a disk FITS file and return their values More...

Keyword &	readNextKey (const std::vector< String > &incList, const std::vector< String > &excList, bool searchFromBeginning=false)
	Read the next key in the HDU which matches a string in incList, and does not match string in excList. More...

virtual void	resetImageRead ()
	force next image reading operation to read from file instead of object cache. More...

virtual double	scale () const
	return the BSCALE keyword value

virtual void	scale (double value)
	set the BSCALE keyword value for images (see warning for images of int type) More...

virtual void	suppressScaling (bool toggle=true)
	turn off image scaling regardless of the BSCALE and BZERO keyword values More...

void	updateChecksum ()
	update the CHECKSUM keyword value, assuming DATASUM exists and is correct More...

std::pair< int, int >	verifyChecksum () const
	verify the HDU by computing the checksums and comparing them with the CHECKSUM/DATASUM keywords More...

void	writeChecksum ()
	compute and write the DATASUM and CHECKSUM keyword values More...

void	writeComment (const String &comment="Generic Comment")
	write a comment string. More...

void	writeDate ()
	write a date string to *this.

void	writeHistory (const String &history="Generic History String")
	write a history string. More...

virtual double	zero () const
	return the BZERO keyword value

virtual void	zero (double value)
	set the BZERO keyword value for images (see warning for images of int type) More...

Protected Member Functions
	Table (FITS *p, HduType xtype, const String &hduName, int rows, const std::vector< String > &columnName, const std::vector< String > &columnFmt, const std::vector< String > &columnUnit=std::vector< String >(), int version=1)
	Constructor to be used for creating new HDUs. More...

	Table (FITS *p, HduType xtype, const String &hduName=String(""), int version=1)
	Constructor to be called by operations that read Table specified by hduName and version.

	Table (FITS *p, HduType xtype, int number)
	Table constructor for getting Tables by number. More...

	Table (FITS *p, int version=1, const String &groupName=String(""))
	Constructor to be called when creating a grouping table. More...

void	init (bool readFlag=false, const std::vector< String > &keys=std::vector< String >())

void	numCols (int value)
	set the number of Columns in the Table

Protected Member Functions inherited from CCfits::ExtHDU
	ExtHDU (FITS *p, HduType xtype, const String &hduName, int bitpix, int naxis, const std::vector< long > &axes, int version)
	writing constructor. More...

	ExtHDU (FITS *p, HduType xtype, const String &hduName, int version)
	default constructor, required as Standard Library Container content.

	ExtHDU (FITS *p, HduType xtype, int number)
	ExtHDU constructor for getting ExtHDUs by number. More...

long	gcount () const
	return required gcount keyword value

void	gcount (long value)
	set required gcount keyword value

long	pcount () const
	return required pcount keyword value

void	pcount (long value)
	set required pcount keyword value

HduType	xtension () const
	return the extension type More...

void	xtension (HduType value)
	set the extension type

Protected Member Functions inherited from CCfits::HDU
	HDU (FITS *p, int bitpix, int naxis, const std::vector< long > &axes)
	constructor for creating new HDU objects, called by HDU subclasses writing to FITS files.

	HDU (FITS *p=0)
	default constructor, called by HDU subclasses that read from FITS files.

virtual	~HDU ()
	destructor

std::vector< long > &	naxes ()
	return the HDU data axis array.

Additional Inherited Members
Static Public Member Functions inherited from CCfits::ExtHDU
static void	readHduName (const fitsfile *fptr, int hduIndex, String &hduName, int &hduVersion)
	read extension name. More...

Static Public Member Functions inherited from CCfits::HDU
static std::vector< int >	keywordCategories ()
	Return the default enumerated keyword categories used by copyAllKeys() More...

Detailed Description

Table is the abstract common interface to Binary and Ascii Table HDUs.

Table is a subclass of ExtHDU that contains an associative array of Column objects. It implements methods for reading and writing columns

Constructor & Destructor Documentation

◆ Table() [1/3]

CCfits::Table::Table	(	FITS *	p,
		HduType	xtype,
		const String &	hduName,
		int	rows,
		const std::vector< String > &	columnName,
		const std::vector< String > &	columnFmt,
		const std::vector< String > &	columnUnit = `std::vector<String>()`,
		int	version = `1`
	)

protected

Constructor to be used for creating new HDUs.

Parameters

p	The FITS file in which to place the new HDU
xtype	An HduType enumerator defined in CCfits.h for type of table (AsciiTbl or BinaryTbl)
hduName	The name of this HDU extension
rows	The number of rows in the new HDU (the value of the NAXIS2 keyword).
columnName	a vector of names for the columns.
columnFmt	the format strings for the columns
columnUnit	the units for the columns.
version	a version number

◆ Table() [2/3]

CCfits::Table::Table	(	FITS *	p,
		int	version = `1`,
		const String &	groupName = `String("")`
	)

protected

Constructor to be called when creating a grouping table.

Parameters

p	The FITS file in which to place the new HDU
version	Version number
groupName	The name of the grouping table

◆ Table() [3/3]

CCfits::Table::Table	(	FITS *	p,
		HduType	xtype,
		int	number
	)

protected

Table constructor for getting Tables by number.

Necessary since EXTNAME is a reserved not required keyword, and users may thus read FITS files without an extension name. Since an HDU is completely specified by extension number, this is part of the public interface.

Member Function Documentation

◆ column() [1/4]

ColMap & CCfits::Table::column ( )

inlinevirtual

return a reference to the multimap containing the columns.

To be used in the implementation of subclasses.

◆ column() [2/4]

const ColMap & CCfits::Table::column ( ) const

inlinevirtual

return a reference to the multimap containing the columns.

This public version might be used to query the size of the column container in a routine that manipulates column table data.

Reimplemented from CCfits::ExtHDU.

◆ column() [3/4]

Column & CCfits::Table::column	(	const String &	colName,
		bool	caseSensitive = `true`
	)		const

virtual

return a reference to a Table column specified by name.

If the caseSensitive parameter is set to false, the search will be case-insensitive. The overridden base class implementation ExtHDU::column throws an exception, which is thus the action to be taken if self is an image extension

Exceptions

WrongExtensionType see above

Reimplemented from CCfits::ExtHDU.

◆ column() [4/4]

Column & CCfits::Table::column ( int colIndex ) const

virtual

return a reference to the column identified by colIndex

Throws NoSuchColumn if the index is out of range -index must satisfy (1 <= index <= numCols() ).

N.B. the column number is assigned as 1-based, as in FORTRAN rather than 0-based as in C.

Exceptions

Table::NoSuchColumn passes colIndex to the diagnostic message printed when the exception is thrown

Reimplemented from CCfits::ExtHDU.

◆ copyColumn()

void CCfits::Table::copyColumn	(	const Column &	inColumn,
		int	colIndx,
		bool	insertNewCol = `true`
	)

virtual

copy a column (from different or same HDU and file) into an existing table HDU.

This is meant to provide the same functionality as CFITSIO's fits_copy_col, and therefore does not work with columns with variable length fields. Copying a column from an AsciiTable to a BinTable is prohibited. colIndx range should be from 1 to nCurrentCols+1 if inserting, or 1 to nCurrentCols if replacing.

Parameters

inColumn	The Column object which is to be copied
colIndx	The position for which the copied Column will be placed (first colIndx = 1).
insertNewCol	If 'true', new Column will be inserted in or appended to table. If 'false', Column will replace current Column at position = colIndx.

Reimplemented from CCfits::ExtHDU.

◆ deleteColumn()

void CCfits::Table::deleteColumn ( const String & columnName )

virtual

delete a column in a Table extension by name.

Parameters

columnName The name of the column to be deleted.

Exceptions

WrongExtensionType if extension is an image.

Reimplemented from CCfits::ExtHDU.

◆ deleteRows() [1/2]

void CCfits::Table::deleteRows ( const std::vector< long > & rowlist )

delete a set of rows in the table specified by an input array.

Parameters

rowlist The vector of row numbers to be deleted.

Exceptions

FitsError thrown if the underlying cfitsio call fails to return without error.

◆ deleteRows() [2/2]

void CCfits::Table::deleteRows	(	long	first,
		long	number = `1`
	)

delete a range of rows in a table.

In both this and the overloaded version which allows a selection of rows to be deleted, the cfitsio library is called first to perform the operation on the disk file, and then the FITS object is updated.

Parameters

first	the start row of the range
number	the number of rows to delete; defaults to 1.

Exceptions

FitsError thrown if the cfitsio call fails to return without error.

◆ getRowsize()

long CCfits::Table::getRowsize ( ) const

virtual

return the optimal number of rows to read or write at a time

A wrapper for the CFITSIO function fits_get_rowsize, useful for obtaining maximum I/O efficiency. This will throw if it is not called for a Table extension.

Reimplemented from CCfits::ExtHDU.

◆ init()

void CCfits::Table::init	(	bool	readFlag = `false`,
		const std::vector< String > &	keys = `std::vector<String>()`
	)

protected

"Late Constructor." wrap-up of calls needed to construct a table. Reads header information and sets up the array of column objects in the table.

Protected function, provided to allow the implementation of extensions of the library.

◆ insertRows()

void CCfits::Table::insertRows	(	long	first,
		long	number = `1`
	)

insert empty rows into the table

Parameters

first	the start row of the range
number	the number of rows to insert.

Exceptions

FitsError thrown if the underlying cfitsio call fails to return without error.

◆ updateRows()

void CCfits::Table::updateRows ( )

update the number of rows in the table

Called to force the Table to reset its internal "rows" attribute. public, but is called when needed internally.

The documentation for this class was generated from the following files:

Table.h
Table.cxx

Classes

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Table() [1/3]

◆ Table() [2/3]

◆ Table() [3/3]

Member Function Documentation

◆ column() [1/4]

◆ column() [2/4]

◆ column() [3/4]

◆ column() [4/4]

◆ copyColumn()

◆ deleteColumn()

◆ deleteRows() [1/2]

◆ deleteRows() [2/2]

◆ getRowsize()

◆ init()

◆ insertRows()

◆ updateRows()