Class EbiDbEntry

Method Details

• clone

  public Object clone() throws CloneNotSupportedException

  Overrides:

  clone in class Object

  Throws:

  CloneNotSupportedException

• getAccession

  public String getAccession()

  Specified by:

  getAccession in interface SequenceDatabaseEntry

• getAnnotations

  public SortedSet<Annotation> getAnnotations()

  Specified by:

  getAnnotations in interface SequenceDatabaseEntry

• getChromosome

  public String getChromosome()

  Specified by:

  getChromosome in interface SequenceDatabaseEntry

• getCrossReferences

  public SortedSet<Accession> getCrossReferences()

  Specified by:

  getCrossReferences in interface SequenceDatabaseEntry

• getGeneName

  public String getGeneName()

  Specified by:

  getGeneName in interface SequenceDatabaseEntry

• getGoTerms

  public SortedSet<GoTerm> getGoTerms()

  Specified by:

  getGoTerms in interface SequenceDatabaseEntry

• getMap

  public String getMap()

  Specified by:

  getMap in interface SequenceDatabaseEntry

• getProvider

  public String getProvider()

  Specified by:

  getProvider in interface SequenceDatabaseEntry

• getSequenceName

  public String getSequenceName()

  Specified by:

  getSequenceName in interface SequenceDatabaseEntry

• getSequenceSymbol

  public String getSequenceSymbol()

  Specified by:

  getSequenceSymbol in interface SequenceDatabaseEntry

• getTaxonomyIdentifier

  public String getTaxonomyIdentifier()

  Specified by:

  getTaxonomyIdentifier in interface SequenceDatabaseEntry

• getTaxonomyScientificName

  public String getTaxonomyScientificName()

  Specified by:

  getTaxonomyScientificName in interface SequenceDatabaseEntry

• isEmpty

  public boolean isEmpty()

  Specified by:

  isEmpty in interface SequenceDatabaseEntry

• setProvider

  public void setProvider(String provider)

• createInstanceFromPlainTextForRefSeq

  public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq(List<String> lines)

• getMolecularSequence

  public MolecularSequence getMolecularSequence()

  Specified by:

  getMolecularSequence in interface SequenceDatabaseEntry