Class Hierarchy
- java.lang.Object
- org.forester.surfacing.BasicBinaryDomainCombination (implements org.forester.protein.BinaryDomainCombination)
- org.forester.surfacing.AdjactantDirectedBinaryDomainCombination
- org.forester.surfacing.DirectedBinaryDomainCombination
- org.forester.surfacing.BasicCombinableDomains (implements org.forester.surfacing.CombinableDomains)
- org.forester.surfacing.AdjactantDirectedCombinableDomains
- org.forester.surfacing.DirectedCombinableDomains
- org.forester.surfacing.BasicDomainSimilarityCalculator (implements org.forester.surfacing.DomainSimilarityCalculator)
- org.forester.surfacing.BasicGenomeWideCombinableDomains (implements org.forester.surfacing.GenomeWideCombinableDomains)
- org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarity (implements org.forester.surfacing.PairwiseDomainSimilarity)
- org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarityCalculator (implements org.forester.surfacing.PairwiseDomainSimilarityCalculator)
- org.forester.surfacing.CountsBasedPairwiseDomainSimilarity (implements org.forester.surfacing.PairwiseDomainSimilarity)
- org.forester.surfacing.DomainArchitectureBasedGenomeSimilarityCalculator
- org.forester.surfacing.DomainCountsBasedPairwiseSimilarityCalculator (implements org.forester.surfacing.PairwiseDomainSimilarityCalculator)
- org.forester.surfacing.DomainCountsDifferenceUtil
- org.forester.surfacing.DomainLengths
- org.forester.surfacing.DomainLengthsTable
- org.forester.surfacing.DomainParsimonyCalculator
- org.forester.surfacing.DomainSimilarity (implements java.lang.Comparable<T>)
- org.forester.surfacing.MappingResults
- org.forester.surfacing.PairwiseGenomeComparator
- org.forester.surfacing.ProteinCountsBasedPairwiseDomainSimilarityCalculator (implements org.forester.surfacing.PairwiseDomainSimilarityCalculator)
- org.forester.surfacing.SimpleDomain (implements org.forester.protein.Domain)
- org.forester.surfacing.SurfacingConstants
- org.forester.surfacing.SurfacingUtil
- org.forester.surfacing.TestSurfacing
- org.forester.surfacing.BasicBinaryDomainCombination (implements org.forester.protein.BinaryDomainCombination)
Interface Hierarchy
- org.forester.surfacing.CombinableDomains
- org.forester.surfacing.DomainSimilarityCalculator
- org.forester.surfacing.GenomeWideCombinableDomains
- org.forester.surfacing.PairwiseDomainSimilarity
- org.forester.surfacing.PairwiseDomainSimilarityCalculator
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- org.forester.surfacing.DomainCountsDifferenceUtil.COPY_CALCULATION_MODE
- org.forester.surfacing.DomainSimilarity.DomainSimilarityScoring
- org.forester.surfacing.DomainSimilarity.DomainSimilaritySortField
- org.forester.surfacing.DomainSimilarity.PRINT_OPTION
- org.forester.surfacing.DomainSimilarityCalculator.Detailedness
- org.forester.surfacing.DomainSimilarityCalculator.GoAnnotationOutput
- org.forester.surfacing.GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)