Interface GenomeWideCombinableDomains

Method Details

• contains

  boolean contains(String key_id)

• get

  CombinableDomains get(String key_id)

• getAllCombinableDomainsIds

  SortedMap<String,CombinableDomains> getAllCombinableDomainsIds()

• getAllDomainIds

  SortedSet<String> getAllDomainIds()

  This should return all domains ids present in the genome.

  Returns:

  a sorted set of domains ids

• getDomainCombinationType

  BinaryDomainCombination.DomainCombinationType getDomainCombinationType()

• getPerGenomeDomainPromiscuityStatistics

  DescriptiveStatistics getPerGenomeDomainPromiscuityStatistics()

  This should return a statistic for per domain promiscuity in a genome.

  Returns:

  descriptive statistics for per domain promiscuity in a genome

• getSize

  int getSize()

• getSpecies

  Species getSpecies()

• toBinaryDomainCombinations

  SortedSet<BinaryDomainCombination> toBinaryDomainCombinations()

  This should return all binary domain combinations present in the genome.

  Returns:

  a sorted set of binary domain combinations

• toStringBuilder

  StringBuilder toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order)

• getMostPromiscuosDomain

  SortedSet<String> getMostPromiscuosDomain()