DomainSimilarityCalculator

All Known Implementing Classes:: BasicDomainSimilarityCalculator

public interface DomainSimilarityCalculator

Nested Class Summary

Nested Classes

Modifier and Type

Interface

Description

static enum

DomainSimilarityCalculator.Detailedness

static enum

DomainSimilarityCalculator.GoAnnotationOutput
Method Summary

Modifier and Type

Method

Description

SortedSet<DomainSimilarity>

calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)

Method Details
- calculateSimilarities
  
  SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)