Package org.forester.surfacing
Class DomainCountsDifferenceUtil
java.lang.Object
org.forester.surfacing.DomainCountsDifferenceUtil
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Nested Class Summary
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionstatic voidcalculateCopyNumberDifferences(List<GenomeWideCombinableDomains> genomes, SortedMap<Species, List<Protein>> protein_lists_per_species, List<String> high_copy_base_species, List<String> high_copy_target_species, List<String> low_copy_species, int min_diff, Double factor, File plain_output_dom, File html_output_dom, File html_output_dc, Map<String, List<GoId>> domain_id_to_go_ids_map, Map<GoId, GoTerm> go_id_to_term_map, File all_domains_go_ids_out_dom, File passing_domains_go_ids_out_dom, File proteins_file_base)
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Constructor Details
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DomainCountsDifferenceUtil
public DomainCountsDifferenceUtil()
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Method Details
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calculateCopyNumberDifferences
public static void calculateCopyNumberDifferences(List<GenomeWideCombinableDomains> genomes, SortedMap<Species, List<Protein>> protein_lists_per_species, List<String> high_copy_base_species, List<String> high_copy_target_species, List<String> low_copy_species, int min_diff, Double factor, File plain_output_dom, File html_output_dom, File html_output_dc, Map<String, throws IOExceptionList<GoId>> domain_id_to_go_ids_map, Map<GoId, GoTerm> go_id_to_term_map, File all_domains_go_ids_out_dom, File passing_domains_go_ids_out_dom, File proteins_file_base) - Throws:
IOException
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