java.lang.Object

org.forester.phylogeny.data.Uri

All Implemented Interfaces:: PhylogenyData

public class Uri extends Object implements PhylogenyData

Constructor Summary

Constructors

Constructor

Description

Uri(String uri_str, String description, String type)

Uri(URI uri)

Uri(URI uri, String description, String type)
Method Summary

Modifier and Type

Method

Description

StringBuffer

asSimpleText()

StringBuffer

asText()

PhylogenyData

copy()

Creates a new PhylogenyData object with identical values as this PhylogenyData.

String

getDescription()

String

getType()

URI

getValue()

boolean

isEqual(PhylogenyData data)

Compares this PhylogenyData to PhylogenyData data.

StringBuffer

toNHX()

void

toPhyloXML(Writer writer, int level, String indentation)

Writes a phyloXML representation of this phylogeny data.

String

toString()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- Uri
  
  public Uri(String uri_str, String description, String type)
- Uri
  
  public Uri(URI uri)
- Uri
  
  public Uri(URI uri, String description, String type)
Method Details
- asSimpleText
  
  public StringBuffer asSimpleText()
  
  Specified by:
  
  asSimpleText in interface PhylogenyData
- asText
  
  public StringBuffer asText()
  
  Specified by:
  
  asText in interface PhylogenyData
- copy
  
  public PhylogenyData copy()
  
  Description copied from interface: PhylogenyData
  
  Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
  
  Specified by:
  
  copy in interface PhylogenyData
  
  Returns:
  
  a ~deep~ copy of this PhylogenyData
- getDescription
  
  public String getDescription()
- getType
  
  public String getType()
- getValue
  
  public URI getValue()
- isEqual
  
  public boolean isEqual(PhylogenyData data)
  
  Description copied from interface: PhylogenyData
  
  Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
  
  Specified by:
  
  isEqual in interface PhylogenyData
  
  Returns:
  
  in general, true if and only if all fiels are exactly identical, false otherwise
- toNHX
  
  public StringBuffer toNHX()
  
  Specified by:
  
  toNHX in interface PhylogenyData
- toPhyloXML
  
  public void toPhyloXML(Writer writer, int level, String indentation) throws IOException
  
  Description copied from interface: PhylogenyData
  
  Writes a phyloXML representation of this phylogeny data.
  
  Specified by:
  
  toPhyloXML in interface PhylogenyData
  
  Throws:
  
  IOException
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object

Class Uri

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

Uri

Uri

Uri

Method Details

asSimpleText

asText

copy

getDescription

getType

getValue

isEqual

toNHX

toPhyloXML

toString