java.lang.Object

org.forester.phylogeny.data.Property

All Implemented Interfaces:: PhylogenyData

public class Property extends Object implements PhylogenyData

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static enum

Property.AppliesTo
Constructor Summary

Constructors

Constructor

Description

Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to)

Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to, String id_ref)
Method Summary

Modifier and Type

Method

Description

StringBuffer

asSimpleText()

StringBuffer

asText()

PhylogenyData

copy()

Creates a new PhylogenyData object with identical values as this PhylogenyData.

static Property

createFromNhxString(String nhx)

Property.AppliesTo

getAppliesTo()

String

getDataType()

String

getIdRef()

String

getRef()

String

getUnit()

String

getValue()

boolean

isEqual(PhylogenyData data)

Compares this PhylogenyData to PhylogenyData data.

void

setValue(String value)

StringBuffer

toNHX()

void

toPhyloXML(Writer writer, int level, String indentation)

Writes a phyloXML representation of this phylogeny data.

String

toString()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- Property
  
  public Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to)
- Property
  
  public Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to, String id_ref)
Method Details
- asSimpleText
  
  public StringBuffer asSimpleText()
  
  Specified by:
  
  asSimpleText in interface PhylogenyData
- asText
  
  public StringBuffer asText()
  
  Specified by:
  
  asText in interface PhylogenyData
- copy
  
  public PhylogenyData copy()
  
  Description copied from interface: PhylogenyData
  
  Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
  
  Specified by:
  
  copy in interface PhylogenyData
  
  Returns:
  
  a ~deep~ copy of this PhylogenyData
- getAppliesTo
  
  public Property.AppliesTo getAppliesTo()
- getDataType
  
  public String getDataType()
- getIdRef
  
  public String getIdRef()
- getRef
  
  public String getRef()
- getUnit
  
  public String getUnit()
- getValue
  
  public String getValue()
- isEqual
  
  public boolean isEqual(PhylogenyData data)
  
  Description copied from interface: PhylogenyData
  
  Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
  
  Specified by:
  
  isEqual in interface PhylogenyData
  
  Returns:
  
  in general, true if and only if all fiels are exactly identical, false otherwise
- setValue
  
  public void setValue(String value)
- toNHX
  
  public StringBuffer toNHX()
  
  Specified by:
  
  toNHX in interface PhylogenyData
- toPhyloXML
  
  public void toPhyloXML(Writer writer, int level, String indentation) throws IOException
  
  Description copied from interface: PhylogenyData
  
  Writes a phyloXML representation of this phylogeny data.
  
  Specified by:
  
  toPhyloXML in interface PhylogenyData
  
  Throws:
  
  IOException
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object
- createFromNhxString
  
  public static Property createFromNhxString(String nhx) throws IllegalArgumentException
  
  Throws:
  
  IllegalArgumentException

Class Property

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

Property

Property

Method Details

asSimpleText

asText

copy

getAppliesTo

getDataType

getIdRef

getRef

getUnit

getValue

isEqual

setValue

toNHX

toPhyloXML

toString

createFromNhxString