java.lang.Object

org.forester.phylogeny.data.NodeVisualData

All Implemented Interfaces:: PhylogenyData

public final class NodeVisualData extends Object implements PhylogenyData

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static enum

NodeVisualData.FontType

static enum

NodeVisualData.NodeFill

static enum

NodeVisualData.NodeShape
Field Summary

Fields

Modifier and Type

Field

Description

static final String

APTX_VISUALIZATION_REF

static final int

DEFAULT_SIZE

static final String

FONT_COLOR_REF

static final String

FONT_COLOR_TYPE

static final String

FONT_REF

static final String

FONT_SIZE_REF

static final String

FONT_SIZE_TYPE

static final String

FONT_STYLE_BOLD

static final String

FONT_STYLE_BOLD_ITALIC

static final String

FONT_STYLE_ITALIC

static final String

FONT_STYLE_PLAIN

static final String

FONT_STYLE_REF

static final String

FONT_STYLE_TYPE

static final String

FONT_TYPE

static final String

NODE_COLOR_REF

static final String

NODE_COLOR_TYPE

static final String

NODE_FILL_GRADIENT

static final String

NODE_FILL_NONE

static final String

NODE_FILL_SOLID

static final String

NODE_FILL_TYPE_REF

static final String

NODE_FILL_TYPE_TYPE

static final String

NODE_SHAPE_CIRCLE

static final String

NODE_SHAPE_RECTANGLE

static final String

NODE_SHAPE_REF

static final String

NODE_SHAPE_TYPE

static final String

NODE_SIZE_REF

static final String

NODE_SIZE_TYPE

static final String

NODE_TRANSPARENCY_REF

static final String

NODE_TRANSPARENCY_TYPE
Constructor Summary

Constructors

Constructor

Description

NodeVisualData()

NodeVisualData(String font_name, NodeVisualData.FontType font_style, byte font_size, Color font_color, NodeVisualData.NodeShape shape, NodeVisualData.NodeFill fill_type, Color node_color, float size, float transparency)
Method Summary

Modifier and Type

Method

Description

final StringBuffer

asSimpleText()

final StringBuffer

asText()

final PhylogenyData

copy()

Creates a new PhylogenyData object with identical values as this PhylogenyData.

final NodeVisualData.NodeFill

getFillType()

final Font

getFont()

final Color

getFontColor()

final String

getFontName()

final byte

getFontSize()

final NodeVisualData.FontType

getFontStyle()

final int

getFontStyleInt()

final Color

getNodeColor()

final NodeVisualData.NodeShape

getShape()

final float

getSize()

final float

getTransparency()

final boolean

isEmpty()

final boolean

isEqual(PhylogenyData data)

Compares this PhylogenyData to PhylogenyData data.

void

parseProperty(Property prop)

final void

setFillType(String fill)

final void

setFillType(NodeVisualData.NodeFill fill_type)

final void

setFontColor(Color font_color)

final void

setFontName(String font_name)

final void

setFontSize(int font_size)

final void

setFontStyle(int font_style)

final void

setFontStyle(String font_style)

final void

setFontStyle(NodeVisualData.FontType font_style)

final void

setNodeColor(Color node_color)

final void

setShape(String shape)

final void

setShape(NodeVisualData.NodeShape shape)

final void

setSize(float size)

final void

setTransparency(float transparency)

final StringBuffer

toNHX()

final void

toPhyloXML(Writer writer, int level, String indentation)

Writes a phyloXML representation of this phylogeny data.

final String

toString()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- APTX_VISUALIZATION_REF
  
  public static final String APTX_VISUALIZATION_REF
  See Also:
  
  Constant Field Values
- DEFAULT_SIZE
  
  public static final int DEFAULT_SIZE
  See Also:
  
  Constant Field Values
- FONT_COLOR_REF
  
  public static final String FONT_COLOR_REF
  See Also:
  
  Constant Field Values
- FONT_COLOR_TYPE
  
  public static final String FONT_COLOR_TYPE
  See Also:
  
  Constant Field Values
- FONT_REF
  
  public static final String FONT_REF
  See Also:
  
  Constant Field Values
- FONT_SIZE_REF
  
  public static final String FONT_SIZE_REF
  See Also:
  
  Constant Field Values
- FONT_SIZE_TYPE
  
  public static final String FONT_SIZE_TYPE
  See Also:
  
  Constant Field Values
- FONT_STYLE_BOLD
  
  public static final String FONT_STYLE_BOLD
  See Also:
  
  Constant Field Values
- FONT_STYLE_BOLD_ITALIC
  
  public static final String FONT_STYLE_BOLD_ITALIC
  See Also:
  
  Constant Field Values
- FONT_STYLE_ITALIC
  
  public static final String FONT_STYLE_ITALIC
  See Also:
  
  Constant Field Values
- FONT_STYLE_PLAIN
  
  public static final String FONT_STYLE_PLAIN
  See Also:
  
  Constant Field Values
- FONT_STYLE_REF
  
  public static final String FONT_STYLE_REF
  See Also:
  
  Constant Field Values
- FONT_STYLE_TYPE
  
  public static final String FONT_STYLE_TYPE
  See Also:
  
  Constant Field Values
- FONT_TYPE
  
  public static final String FONT_TYPE
  See Also:
  
  Constant Field Values
- NODE_COLOR_REF
  
  public static final String NODE_COLOR_REF
  See Also:
  
  Constant Field Values
- NODE_COLOR_TYPE
  
  public static final String NODE_COLOR_TYPE
  See Also:
  
  Constant Field Values
- NODE_FILL_GRADIENT
  
  public static final String NODE_FILL_GRADIENT
  See Also:
  
  Constant Field Values
- NODE_FILL_NONE
  
  public static final String NODE_FILL_NONE
  See Also:
  
  Constant Field Values
- NODE_FILL_SOLID
  
  public static final String NODE_FILL_SOLID
  See Also:
  
  Constant Field Values
- NODE_FILL_TYPE_REF
  
  public static final String NODE_FILL_TYPE_REF
  See Also:
  
  Constant Field Values
- NODE_FILL_TYPE_TYPE
  
  public static final String NODE_FILL_TYPE_TYPE
  See Also:
  
  Constant Field Values
- NODE_SHAPE_CIRCLE
  
  public static final String NODE_SHAPE_CIRCLE
  See Also:
  
  Constant Field Values
- NODE_SHAPE_RECTANGLE
  
  public static final String NODE_SHAPE_RECTANGLE
  See Also:
  
  Constant Field Values
- NODE_SHAPE_REF
  
  public static final String NODE_SHAPE_REF
  See Also:
  
  Constant Field Values
- NODE_SHAPE_TYPE
  
  public static final String NODE_SHAPE_TYPE
  See Also:
  
  Constant Field Values
- NODE_SIZE_REF
  
  public static final String NODE_SIZE_REF
  See Also:
  
  Constant Field Values
- NODE_SIZE_TYPE
  
  public static final String NODE_SIZE_TYPE
  See Also:
  
  Constant Field Values
- NODE_TRANSPARENCY_REF
  
  public static final String NODE_TRANSPARENCY_REF
  See Also:
  
  Constant Field Values
- NODE_TRANSPARENCY_TYPE
  
  public static final String NODE_TRANSPARENCY_TYPE
  See Also:
  
  Constant Field Values
Constructor Details
- NodeVisualData
  
  public NodeVisualData()
- NodeVisualData
  
  public NodeVisualData(String font_name, NodeVisualData.FontType font_style, byte font_size, Color font_color, NodeVisualData.NodeShape shape, NodeVisualData.NodeFill fill_type, Color node_color, float size, float transparency)
Method Details
- asSimpleText
  
  public final StringBuffer asSimpleText()
  
  Specified by:
  
  asSimpleText in interface PhylogenyData
- asText
  
  public final StringBuffer asText()
  
  Specified by:
  
  asText in interface PhylogenyData
- copy
  
  public final PhylogenyData copy()
  
  Description copied from interface: PhylogenyData
  
  Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
  
  Specified by:
  
  copy in interface PhylogenyData
  
  Returns:
  
  a ~deep~ copy of this PhylogenyData
- getFillType
  
  public final NodeVisualData.NodeFill getFillType()
- getFont
  
  public final Font getFont()
- getFontColor
  
  public final Color getFontColor()
- getFontName
  
  public final String getFontName()
- getFontSize
  
  public final byte getFontSize()
- getFontStyle
  
  public final NodeVisualData.FontType getFontStyle()
- getFontStyleInt
  
  public final int getFontStyleInt()
- getNodeColor
  
  public final Color getNodeColor()
- getShape
  
  public final NodeVisualData.NodeShape getShape()
- getSize
  
  public final float getSize()
- getTransparency
  
  public final float getTransparency()
- isEmpty
  
  public final boolean isEmpty()
- isEqual
  
  public final boolean isEqual(PhylogenyData data)
  
  Description copied from interface: PhylogenyData
  
  Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
  
  Specified by:
  
  isEqual in interface PhylogenyData
  
  Returns:
  
  in general, true if and only if all fiels are exactly identical, false otherwise
- parseProperty
  
  public void parseProperty(Property prop)
- setFillType
  
  public final void setFillType(NodeVisualData.NodeFill fill_type)
- setFillType
  
  public final void setFillType(String fill)
- setFontColor
  
  public final void setFontColor(Color font_color)
- setFontName
  
  public final void setFontName(String font_name)
- setFontSize
  
  public final void setFontSize(int font_size)
- setFontStyle
  
  public final void setFontStyle(NodeVisualData.FontType font_style)
- setFontStyle
  
  public final void setFontStyle(int font_style)
- setFontStyle
  
  public final void setFontStyle(String font_style)
- setNodeColor
  
  public final void setNodeColor(Color node_color)
- setShape
  
  public final void setShape(NodeVisualData.NodeShape shape)
- setShape
  
  public final void setShape(String shape)
- setSize
  
  public final void setSize(float size)
- setTransparency
  
  public final void setTransparency(float transparency)
- toNHX
  
  public final StringBuffer toNHX()
  
  Specified by:
  
  toNHX in interface PhylogenyData
- toPhyloXML
  
  public final void toPhyloXML(Writer writer, int level, String indentation) throws IOException
  
  Description copied from interface: PhylogenyData
  
  Writes a phyloXML representation of this phylogeny data.
  
  Specified by:
  
  toPhyloXML in interface PhylogenyData
  
  Throws:
  
  IOException
- toString
  
  public final String toString()
  
  Overrides:
  
  toString in class Object

Class NodeVisualData

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

APTX_VISUALIZATION_REF

DEFAULT_SIZE

FONT_COLOR_REF

FONT_COLOR_TYPE

FONT_REF

FONT_SIZE_REF

FONT_SIZE_TYPE

FONT_STYLE_BOLD

FONT_STYLE_BOLD_ITALIC

FONT_STYLE_ITALIC

FONT_STYLE_PLAIN

FONT_STYLE_REF

FONT_STYLE_TYPE

FONT_TYPE

NODE_COLOR_REF

NODE_COLOR_TYPE

NODE_FILL_GRADIENT

NODE_FILL_NONE

NODE_FILL_SOLID

NODE_FILL_TYPE_REF

NODE_FILL_TYPE_TYPE

NODE_SHAPE_CIRCLE

NODE_SHAPE_RECTANGLE

NODE_SHAPE_REF

NODE_SHAPE_TYPE

NODE_SIZE_REF

NODE_SIZE_TYPE

NODE_TRANSPARENCY_REF

NODE_TRANSPARENCY_TYPE

Constructor Details

NodeVisualData

NodeVisualData

Method Details

asSimpleText

asText

copy

getFillType

getFont

getFontColor

getFontName

getFontSize

getFontStyle

getFontStyleInt

getNodeColor

getShape

getSize

getTransparency

isEmpty

isEqual

parseProperty

setFillType

setFillType

setFontColor

setFontName

setFontSize

setFontStyle

setFontStyle

setFontStyle

setNodeColor

setShape

setShape

setSize

setTransparency

toNHX

toPhyloXML

toString