Package org.forester.msa
Class ResampleableMsa
java.lang.Object
org.forester.msa.BasicMsa
org.forester.msa.ResampleableMsa
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Msa
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Nested Class Summary
Nested classes/interfaces inherited from interface org.forester.msa.Msa
Msa.MSA_FORMAT -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionfinal chargetResidueAt(int row, int col) getSequence(int row) final voidresample(int[] resampled_column_positions) final voidsetResidueAt(int row, int col, char residue) Methods inherited from class org.forester.msa.BasicMsa
asSequenceList, createInstance, getColumnAt, getIdentifier, getLength, getNumberOfSequences, getSequence, getSequenceAsString, getType, isGapAt, setIdentifier, toString, write
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Constructor Details
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ResampleableMsa
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Method Details
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getResidueAt
public final char getResidueAt(int row, int col) - Specified by:
getResidueAtin interfaceMsa- Overrides:
getResidueAtin classBasicMsa
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resample
public final void resample(int[] resampled_column_positions) -
setResidueAt
public final void setResidueAt(int row, int col, char residue) - Specified by:
setResidueAtin interfaceMsa- Overrides:
setResidueAtin classBasicMsa
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getSequence
- Specified by:
getSequencein interfaceMsa- Overrides:
getSequencein classBasicMsa
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