MsaInferrer

java.lang.Object

org.forester.msa.MsaInferrer

Direct Known Subclasses:: ClustalOmega, Mafft

public abstract class MsaInferrer extends Object

Constructor Summary

Constructors

Constructor

Description

MsaInferrer()
Method Summary

Modifier and Type

Method

Description

Object

clone()

abstract String

getErrorDescription()

abstract int

getExitCode()

abstract Msa

infer(File path_to_input_seqs, List<String> opts)

abstract Msa

infer(List<MolecularSequence> seqs, List<String> opts)

static boolean

isInstalled(String path_to_prg)

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- MsaInferrer
  
  public MsaInferrer()
Method Details
- getErrorDescription
  
  public abstract String getErrorDescription()
- getExitCode
  
  public abstract int getExitCode()
- isInstalled
  
  public static boolean isInstalled(String path_to_prg)
- clone
  
  public Object clone()
  
  Overrides:
  
  clone in class Object
- infer
  
  public abstract Msa infer(File path_to_input_seqs, List<String> opts) throws IOException, InterruptedException
  
  Throws:
  
  IOException
  
  InterruptedException
- infer
  
  public abstract Msa infer(List<MolecularSequence> seqs, List<String> opts) throws IOException, InterruptedException
  
  Throws:
  
  IOException
  
  InterruptedException