SequenceWriter

java.lang.Object

org.forester.io.writers.SequenceWriter

public class SequenceWriter extends Object

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static enum

SequenceWriter.SEQ_FORMAT
Constructor Summary

Constructors

Constructor

Description

SequenceWriter()
Method Summary

Modifier and Type

Method

Description

static StringBuilder

toFasta(String name, String mol_seq, int width)

static StringBuilder

toFasta(MolecularSequence seq, int width)

static void

toFasta(MolecularSequence seq, Writer w, int width)

static void

writeSeqs(List<MolecularSequence> seqs, File file, SequenceWriter.SEQ_FORMAT format, int width)

static void

writeSeqs(List<MolecularSequence> seqs, Writer writer, SequenceWriter.SEQ_FORMAT format, int width)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SequenceWriter
  
  public SequenceWriter()
Method Details
- toFasta
  
  public static StringBuilder toFasta(MolecularSequence seq, int width)
- toFasta
  
  public static StringBuilder toFasta(String name, String mol_seq, int width)
- toFasta
  
  public static void toFasta(MolecularSequence seq, Writer w, int width) throws IOException
  
  Throws:
  
  IOException
- writeSeqs
  
  public static void writeSeqs(List<MolecularSequence> seqs, File file, SequenceWriter.SEQ_FORMAT format, int width) throws IOException
  
  Throws:
  
  IOException
- writeSeqs
  
  public static void writeSeqs(List<MolecularSequence> seqs, Writer writer, SequenceWriter.SEQ_FORMAT format, int width) throws IOException
  
  Throws:
  
  IOException