java.lang.Object

org.forester.io.parsers.tol.TolParser

All Implemented Interfaces:: PhylogenyParser

public class TolParser extends Object implements PhylogenyParser

Field Summary

Fields

Modifier and Type

Field

Description

static final String

APACHE_FEATURES_VALIDATION_SCHEMA

static final String

APACHE_FEATURES_VALIDATION_SCHEMA_FULL

static final String

APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

static final String

JAXP_SCHEMA_LANGUAGE

static final String

JAXP_SCHEMA_SOURCE

static final String

SAX_FEATURES_VALIDATION

static final String

W3C_XML_SCHEMA
Constructor Summary

Constructors

Constructor

Description

TolParser()
Method Summary

Modifier and Type

Method

Description

int

getErrorCount()

StringBuffer

getErrorMessages()

String

getName()

int

getWarningCount()

StringBuffer

getWarningMessages()

boolean

isValid()

Phylogeny[]

parse()

void

setSource(Object source)

void

setValidateAgainstSchema(String schema_location)

void

setZippedInputstream(boolean zipped_inputstream)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- JAXP_SCHEMA_LANGUAGE
  
  public static final String JAXP_SCHEMA_LANGUAGE
  See Also:
  
  Constant Field Values
- W3C_XML_SCHEMA
  
  public static final String W3C_XML_SCHEMA
  See Also:
  
  Constant Field Values
- JAXP_SCHEMA_SOURCE
  
  public static final String JAXP_SCHEMA_SOURCE
  See Also:
  
  Constant Field Values
- SAX_FEATURES_VALIDATION
  
  public static final String SAX_FEATURES_VALIDATION
  See Also:
  
  Constant Field Values
- APACHE_FEATURES_VALIDATION_SCHEMA
  
  public static final String APACHE_FEATURES_VALIDATION_SCHEMA
  See Also:
  
  Constant Field Values
- APACHE_FEATURES_VALIDATION_SCHEMA_FULL
  
  public static final String APACHE_FEATURES_VALIDATION_SCHEMA_FULL
  See Also:
  
  Constant Field Values
- APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION
  
  public static final String APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION
  See Also:
  
  Constant Field Values
Constructor Details
- TolParser
  
  public TolParser()
Method Details
- getErrorCount
  
  public int getErrorCount()
- getErrorMessages
  
  public StringBuffer getErrorMessages()
- getWarningCount
  
  public int getWarningCount()
- getWarningMessages
  
  public StringBuffer getWarningMessages()
- isValid
  
  public boolean isValid()
- parse
  
  public Phylogeny[] parse() throws IOException, PhylogenyParserException
  
  Specified by:
  
  parse in interface PhylogenyParser
  
  Throws:
  
  IOException
  
  PhylogenyParserException
- setSource
  
  public void setSource(Object source)
  
  Specified by:
  
  setSource in interface PhylogenyParser
- setValidateAgainstSchema
  
  public void setValidateAgainstSchema(String schema_location)
- setZippedInputstream
  
  public void setZippedInputstream(boolean zipped_inputstream)
- getName
  
  public String getName()
  
  Specified by:
  
  getName in interface PhylogenyParser

Class TolParser

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

JAXP_SCHEMA_LANGUAGE

W3C_XML_SCHEMA

JAXP_SCHEMA_SOURCE

SAX_FEATURES_VALIDATION

APACHE_FEATURES_VALIDATION_SCHEMA

APACHE_FEATURES_VALIDATION_SCHEMA_FULL

APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

Constructor Details

TolParser

Method Details

getErrorCount

getErrorMessages

getWarningCount

getWarningMessages

isValid

parse

setSource

setValidateAgainstSchema

setZippedInputstream

getName