PhyloXmlHandler

java.lang.Object

org.xml.sax.helpers.DefaultHandler

org.forester.io.parsers.phyloxml.PhyloXmlHandler

All Implemented Interfaces:: ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public final class PhyloXmlHandler extends DefaultHandler

Method Summary

Modifier and Type

Method

Description

static boolean

attributeEqualsValue(XmlElement element, String attributeName, String attributeValue)

void

characters(char[] chars, int start_index, int end_index)

void

endElement(String namespace_uri, String local_name, String qualified_name)

static String

getAtttributeValue(XmlElement element, String attributeName)

static Map<String,Sequence>

getSequenceMapByIdForPhylogeny(Phylogeny ph)

void

startDocument()

void

startElement(String namespace_uri, String local_name, String qualified_name, Attributes attributes)

Methods inherited from class org.xml.sax.helpers.DefaultHandler
endDocument, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.xml.sax.ContentHandler
declaration

Method Details
- characters
  
  public void characters(char[] chars, int start_index, int end_index)
  
  Specified by:
  
  characters in interface ContentHandler
  
  Overrides:
  
  characters in class DefaultHandler
- endElement
  
  public void endElement(String namespace_uri, String local_name, String qualified_name) throws SAXException
  
  Specified by:
  
  endElement in interface ContentHandler
  
  Overrides:
  
  endElement in class DefaultHandler
  
  Throws:
  
  SAXException
- startDocument
  
  public void startDocument() throws SAXException
  
  Specified by:
  
  startDocument in interface ContentHandler
  
  Overrides:
  
  startDocument in class DefaultHandler
  
  Throws:
  
  SAXException
- startElement
  
  public void startElement(String namespace_uri, String local_name, String qualified_name, Attributes attributes) throws SAXException
  
  Specified by:
  
  startElement in interface ContentHandler
  
  Overrides:
  
  startElement in class DefaultHandler
  
  Throws:
  
  SAXException
- attributeEqualsValue
  
  public static boolean attributeEqualsValue(XmlElement element, String attributeName, String attributeValue)
- getAtttributeValue
  
  public static String getAtttributeValue(XmlElement element, String attributeName)
- getSequenceMapByIdForPhylogeny
  
  public static Map<String,Sequence> getSequenceMapByIdForPhylogeny(Phylogeny ph)