org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix

public final class BasicSymmetricalDistanceMatrix extends Object implements DistanceMatrix

Nested Class Summary

Nested classes/interfaces inherited from interface org.forester.evoinference.matrix.distance.DistanceMatrix
DistanceMatrix.Format
Constructor Summary

Constructors

Constructor

Description

BasicSymmetricalDistanceMatrix(int size)
Method Summary

Modifier and Type

Method

Description

final String

getIdentifier(int i)

final int

getIndex(String identifier)

final int

getSize()

final double

getValue(int col, int row)

final double[][]

getValues()

final void

randomize(long seed)

final void

setIdentifier(int i, String identifier)

final void

setRow(String s, int row)

final void

setValue(int col, int row, double d)

final String

toString()

final StringBuffer

toStringBuffer(DistanceMatrix.Format format)

final void

write(Writer w)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- BasicSymmetricalDistanceMatrix
  
  public BasicSymmetricalDistanceMatrix(int size)
Method Details
- getIdentifier
  
  public final String getIdentifier(int i)
  
  Specified by:
  
  getIdentifier in interface DistanceMatrix
- getIndex
  
  public final int getIndex(String identifier)
  
  Specified by:
  
  getIndex in interface DistanceMatrix
- getSize
  
  public final int getSize()
  
  Specified by:
  
  getSize in interface DistanceMatrix
- getValue
  
  public final double getValue(int col, int row)
  
  Specified by:
  
  getValue in interface DistanceMatrix
- getValues
  
  public final double[][] getValues()
- randomize
  
  public final void randomize(long seed)
- setIdentifier
  
  public final void setIdentifier(int i, String identifier)
  
  Specified by:
  
  setIdentifier in interface DistanceMatrix
- setRow
  
  public final void setRow(String s, int row)
- setValue
  
  public final void setValue(int col, int row, double d)
  
  Specified by:
  
  setValue in interface DistanceMatrix
- toString
  
  public final String toString()
  
  Overrides:
  
  toString in class Object
- toStringBuffer
  
  public final StringBuffer toStringBuffer(DistanceMatrix.Format format)
  
  Specified by:
  
  toStringBuffer in interface DistanceMatrix
- write
  
  public final void write(Writer w) throws IOException
  
  Throws:
  
  IOException

Class BasicSymmetricalDistanceMatrix

Nested Class Summary