Package org.biojava.nbio.ws.alignment
package org.biojava.nbio.ws.alignment
This package contains the interfaces that need to be implemented by discrete alignment services. The development philosophy is to separate actual submission of alignment requests from getting the corresponding results in any format supported by the service.
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InterfacesClassDescriptionRemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.RemotePairwiseAlignmentProperties is a interface that contains the barest of methods for setting and getting Alignment properties.This interface specifies minimal information needed to execute a pairwise alignment on a remote service.