Class JmolSymmetryScriptGeneratorCn
java.lang.Object
org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator
org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup
org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorCn
- Author:
- Peter
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Constructor Summary
ConstructorDescriptionJmolSymmetryScriptGeneratorCn
(RotationAxisAligner axisTransformation, String name) -
Method Summary
Modifier and TypeMethodDescriptionint
Returns the number of orientations available for this structuregetOrientationName
(int index) Returns the name of a specific orientationint
getZoom()
Returns the Jmol zoom to fit polyhedron and symmetry axes.Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup
colorBySequenceCluster, colorBySubunit, colorBySymmetry, drawAxes, drawPolyhedron, getAxisTransformation, getDefaultOrientation, getMaxExtension, getMeanExtension, getOrientation, getOrientationWithZoom, getPolyhedron, getRotationGroup, getTransformation, hideAxes, hidePolyhedron, playOrientations, setAxisTransformation, setDefaultColoring, setOnTheFly, setPolyhedron, setRotationGroup, showAxes, showPolyhedron
Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator
f1Dot2, fDot2, getInstance, getInstantaneousOrientation, getJmolColor, getJmolColorScript, getJmolLigandScript, getJmolPoint, jMolFloat
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Constructor Details
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JmolSymmetryScriptGeneratorCn
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Method Details
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getZoom
public int getZoom()Description copied from class:JmolSymmetryScriptGenerator
Returns the Jmol zoom to fit polyhedron and symmetry axes. This zoom level should be used so that the polyhedron and symmetry axes are not cutoff.- Specified by:
getZoom
in classJmolSymmetryScriptGeneratorPointGroup
- Returns:
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getOrientationCount
public int getOrientationCount()Description copied from class:JmolSymmetryScriptGenerator
Returns the number of orientations available for this structure- Overrides:
getOrientationCount
in classJmolSymmetryScriptGeneratorPointGroup
- Returns:
- number of orientations
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getOrientationName
Returns the name of a specific orientation- Overrides:
getOrientationName
in classJmolSymmetryScriptGeneratorPointGroup
- Parameters:
index
- orientation index- Returns:
- name of orientation
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