JmolSymmetryScriptGeneratorC1

java.lang.Object

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorC1

public class JmolSymmetryScriptGeneratorC1 extends JmolSymmetryScriptGeneratorPointGroup

Author:: Peter

Constructor Summary

Constructors

Constructor

Description

JmolSymmetryScriptGeneratorC1(RotationAxisAligner axisTransformation, String name)
Method Summary

Modifier and Type

Method

Description

int

getOrientationCount()

Returns the number of orientations available for this structure

int

getZoom()

Returns the Jmol zoom to fit polyhedron and symmetry axes.

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup
colorBySequenceCluster, colorBySubunit, colorBySymmetry, drawAxes, drawPolyhedron, getAxisTransformation, getDefaultOrientation, getMaxExtension, getMeanExtension, getOrientation, getOrientationName, getOrientationWithZoom, getPolyhedron, getRotationGroup, getTransformation, hideAxes, hidePolyhedron, playOrientations, setAxisTransformation, setDefaultColoring, setOnTheFly, setPolyhedron, setRotationGroup, showAxes, showPolyhedron

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator
f1Dot2, fDot2, getInstance, getInstantaneousOrientation, getJmolColor, getJmolColorScript, getJmolLigandScript, getJmolPoint, jMolFloat

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- JmolSymmetryScriptGeneratorC1
  
  public JmolSymmetryScriptGeneratorC1(RotationAxisAligner axisTransformation, String name)
Method Details
- getZoom
  
  public int getZoom()
  
  Description copied from class: JmolSymmetryScriptGenerator
  
  Returns the Jmol zoom to fit polyhedron and symmetry axes. This zoom level should be used so that the polyhedron and symmetry axes are not cutoff.
  
  Specified by:
  
  getZoom in class JmolSymmetryScriptGeneratorPointGroup
  
  Returns:
- getOrientationCount
  
  public int getOrientationCount()
  
  Description copied from class: JmolSymmetryScriptGenerator
  
  Returns the number of orientations available for this structure
  
  Overrides:
  
  getOrientationCount in class JmolSymmetryScriptGeneratorPointGroup
  
  Returns:
  
  number of orientations