SequenceFunctionOrderDetector

java.lang.Object

org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector

All Implemented Interfaces:: OrderDetector

public class SequenceFunctionOrderDetector extends Object implements OrderDetector

Calls Spencer's method for determining order. This method uses the sequence alignment information to guess the order of symmetry.

Since:: 4.2.0
Author:: dmyersturnbull

Constructor Summary

Constructors

Constructor

Description

SequenceFunctionOrderDetector()

SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
Method Summary

Modifier and Type

Method

Description

int

calculateOrder(AFPChain afpChain, Atom[] ca)

String

toString()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- SequenceFunctionOrderDetector
  
  public SequenceFunctionOrderDetector()
- SequenceFunctionOrderDetector
  
  public SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
Method Details
- calculateOrder
  
  public int calculateOrder(AFPChain afpChain, Atom[] ca) throws RefinerFailedException
  
  Specified by:
  
  calculateOrder in interface OrderDetector
  
  Throws:
  
  RefinerFailedException
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object