Package org.biojava.nbio.structure.symmetry.core

Class QuatSymmetryDetector

java.lang.Object
org.biojava.nbio.structure.symmetry.core.QuatSymmetryDetector
public class QuatSymmetryDetector extends Object
Detects global and local quaternary protein structure symmetry in a structure. The QuatSymmetryParameter settings affect the calculated results.
Author:
Peter Rose

  • Constructor Details

  • Method Details

    • hasProteinSubunits

      public boolean hasProteinSubunits()
      Returns true if structure contains protein subunits. The other methods in this class will only return data if protein subunits are present. Always use this method first, before retrieving global or local symmetry results.
      Returns:
      true if protein subunits are present

    • getGlobalSymmetry

      public List<QuatSymmetryResults> getGlobalSymmetry()
      Returns list of global quaternary structure symmetry results
      Returns:
      list of global quaternary structure symmetry results

    • getLocalSymmetries

      public List<List<QuatSymmetryResults>> getLocalSymmetries()
      Returns a list of lists of local quaternary structure symmetry results
      Returns:
      list of lists of local quaternary structure symmetry results

    • calcQuatSymmetry

      public static QuatSymmetryResults calcQuatSymmetry(Subunits subunits, QuatSymmetryParameters parameters)