org.biojava.nbio.structure.symmetry.core.QuatSuperpositionScorer

public class QuatSuperpositionScorer extends Object

Constructor Details
- QuatSuperpositionScorer
  
  public QuatSuperpositionScorer()
Method Details
- calcScores
  
  public static QuatSymmetryScores calcScores(Subunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation)
  
  Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
  
  Parameters:
  
  subunits - subunits to be scored
  
  transformation - transformation matrix
  
  permutations - permutation that determines which subunits are superposed
  
  Returns:

Class QuatSuperpositionScorer

Constructor Summary