Package org.biojava.nbio.structure.symmetry.core

Class ProteinChainExtractor

java.lang.Object
org.biojava.nbio.structure.symmetry.core.ProteinChainExtractor
public class ProteinChainExtractor extends Object
Extracts information about all the chains in a structure, including chain Ids, sequences, and atoms. Includes both protein and nucleic acid chains.

  • Constructor Details

  • Method Details

    • getCalphaTraces

      public List<Atom[]> getCalphaTraces()

    • getChainIds

      public List<String> getChainIds()

    • getModelNumbers

      public List<Integer> getModelNumbers()

    • getSequences

      public List<String> getSequences()

    • getNucleicAcidChainCount

      public int getNucleicAcidChainCount()
      Returns:
      the nucleicAcidChainCount

    • getAdjustedMinimumSequenceLength

      public int getAdjustedMinimumSequenceLength()