Package org.biojava.nbio.structure.secstruc
package org.biojava.nbio.structure.secstruc
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ClassDescriptionContainer that represents a beta Bridge between two residues.A bridge is formed by two non-overlapping stretches of three residues each (i-1,i,i+1) and (j-1,j,j+1), where i<j.Class to parse a DSSP file (output of the DSSP program), that contains the secondary structure assignment of a structure.Container that represents a hidrogen bond.A Ladder is a set of one or more consecutive bridges of identical type.Calculate and assign the secondary structure (SS) to the Groups of a Structure object.A secondary structure element (SSE) is an object representing a block of sequential residues that share the same secondary structure type.Container for the secondary structure information of a single residue.This class extends the basic container for secondary structure annotation, including all the information used in the DSSP algorithm.This class contains methods for obtaining and converting secondary structure information from BioJava
Structures.This enum contains all of the secondary structure types found in the DSSP output.