Package org.biojava.nbio.structure.secstruc

Enum Class BridgeType

java.lang.Object
java.lang.Enum<BridgeType>
org.biojava.nbio.structure.secstruc.BridgeType
All Implemented Interfaces:
Serializable, Comparable<BridgeType>, Constable
public enum BridgeType extends Enum<BridgeType>
A bridge is formed by two non-overlapping stretches of three residues each (i-1,i,i+1) and (j-1,j,j+1), where i<j.

Depending on two basic patterns, a Bridge can be either of type parallel (H bonds in {(i-1,j) and (j,i+1)} OR {(j-1,i) and (i,j-1)}) or antiparallel (H bonds in {(i1,j) and (j,i} OR {(i-1,j+1) and (j-1,i+1)})

Author:
Andreas Prlic, Aleix Lafita

  • Enum Constant Details

    • parallel

      public static final BridgeType parallel

    • antiparallel

      public static final BridgeType antiparallel

  • Field Details

  • Method Details

    • values

      public static BridgeType[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static BridgeType valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • fromCharacter

      public static BridgeType fromCharacter(Character stype)

    • toString

      public String toString()
      Overrides:
      toString in class Enum<BridgeType>