Package org.biojava.nbio.structure.scop
package org.biojava.nbio.structure.scop
Parsers and API for SCOP, Structural Classification of Proteins.
See DemoSCOP.java for an example.
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ClassDescriptionProvides programmatic access to ASTRAL representative sets.An ASTRAL sequence-identity cutoff with an identifier such as:SCOPe: The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley (http://scop.berkeley.edu/).An extension of the RemoteScopInstallation that caches some of the data locally.Classes which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead.A class that fetches information about SCOP from a remote data-source.The various categories provided by SCOP.General API how to interact with SCOPContains data from dir.des.scop.txt_1.75Container for the information for a domain.Controls the global ScopDatabase being used.This class provides access to the SCOP protein structure classification.Indicates that an I/O error occurred with SCOP lazy initialization.Helper class to store paths to the four SCOP files The string "%s" is replaced with the version number.