BerkeleyScopInstallation

java.lang.Object

org.biojava.nbio.structure.scop.ScopInstallation

org.biojava.nbio.structure.scop.BerkeleyScopInstallation

All Implemented Interfaces:: LocalScopDatabase, ScopDatabase

public class BerkeleyScopInstallation extends ScopInstallation

SCOPe: The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley (http://scop.berkeley.edu/).

This provides updates to the MRC SCOP hierarchical classification.

Field Summary

Fields

Modifier and Type

Field

Description

static final Map<String,String[]>

EQUIVALENT_VERSIONS

A map from SCOP version names which the Berkeley server offers as a download to an array of equivalent deprecated SCOP version names.

Fields inherited from class org.biojava.nbio.structure.scop.ScopInstallation
claFileName, comFileName, DEFAULT_VERSION, desFileName, FILESPLIT, hieFileName, NEWLINE, SCOP_DOWNLOAD, SCOP_DOWNLOAD_ALTERNATE, scopVersion
Constructor Summary

Constructors

Constructor

Description

BerkeleyScopInstallation()
Method Summary

Methods inherited from class org.biojava.nbio.structure.scop.ScopInstallation
addMirror, downloadClaFile, downloadComFile, downloadDesFile, downloadFileFromRemote, downloadHieFile, ensureClaInstalled, ensureComInstalled, ensureDesInstalled, ensureHieInstalled, filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getCacheLocation, getClaFilename, getComFilename, getComments, getDesFilename, getDomainByScopID, getDomainsForPDB, getHieFilename, getMirrors, getScopDescriptionBySunid, getScopDomainsBySunid, getScopDownloadURL, getScopNode, getScopVersion, getTree, nullifyComments, setCacheLocation, setScopDownloadURL, setScopVersion

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- EQUIVALENT_VERSIONS
  
  public static final Map<String,String[]> EQUIVALENT_VERSIONS
  
  A map from SCOP version names which the Berkeley server offers as a download to an array of equivalent deprecated SCOP version names.
Constructor Details
- BerkeleyScopInstallation
  
  public BerkeleyScopInstallation()