org.biojava.nbio.structure.io Class Hierarchy

Class Hierarchy

java.lang.Object
- org.biojava.nbio.structure.io.BondMaker
- org.biojava.nbio.structure.io.CAConverter
- org.biojava.nbio.structure.io.ChargeAdder
- org.biojava.nbio.structure.io.CompoundFinder
- org.biojava.nbio.structure.io.FastaAFPChainConverter
- org.biojava.nbio.structure.io.FastaStructureParser
- org.biojava.nbio.structure.io.FileConvert
- org.biojava.nbio.structure.io.FileParsingParameters (implements java.io.Serializable)
- org.biojava.nbio.structure.io.GroupToSDF
- org.biojava.nbio.structure.io.LocalPDBDirectory (implements org.biojava.nbio.structure.io.StructureIOFile)
  - org.biojava.nbio.structure.io.MMCIFFileReader
  - org.biojava.nbio.structure.io.PDBFileReader
- org.biojava.nbio.structure.io.PDBBioAssemblyParser
- org.biojava.nbio.structure.io.PDBFileParser
- org.biojava.nbio.structure.io.SandboxStyleStructureProvider (implements org.biojava.nbio.structure.io.StructureProvider)
- org.biojava.nbio.structure.io.SeqRes2AtomAligner
- org.biojava.nbio.structure.io.SSBondImpl (implements java.lang.Cloneable, org.biojava.nbio.structure.PDBRecord, java.io.Serializable)
- org.biojava.nbio.structure.io.StructureSequenceMatcher
- java.lang.Throwable (implements java.io.Serializable)
  - java.lang.Exception
    - org.biojava.nbio.structure.io.PDBParseException

Interface Hierarchy

org.biojava.nbio.structure.io.StructureProvider
- org.biojava.nbio.structure.io.StructureIOFile

Enum Class Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - org.biojava.nbio.structure.io.LocalPDBDirectory.FetchBehavior
  - org.biojava.nbio.structure.io.LocalPDBDirectory.ObsoleteBehavior