Package org.biojava.nbio.structure.io.mmcif.model
package org.biojava.nbio.structure.io.mmcif.model
Datamodel objects used for processing mmcif files. This are beans that can represent the data from a category in mmcif.
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ClassDescriptiona generic class that implements the toString method for a beanA class containing the _atom_sites data.A definition for a Chemical Component, as maintained by the wwPDB.stores these fields: _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinalContainer object for _pdbx_chem_comp_descriptorAnnotation indicating that a specific field of a bean should be mapped to a different labelA simple class to represent Entity records in mmCif filesContainer for _entity_poly_seq recordsData items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated.Data items in the ENTITY_SRC_NAT category record details of the source from which the entity was obtained in cases where the entity was isolated directly from a natural tissue.PDBX_ENTITY_SRC_SYN records the details about each chemically synthesized molecule (entity) in the asymmetric unit.Annotation indicating that a specific field of a bean should be ignored_pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifierA bean for the Pdbx_entity_nonpoly category.A bean for the PDBX_NONPOLY_SCHEME category, which provides residue level nomenclature mapping for non-polymer entities.A bean for the PDBX_POLY_SEQ_SCHEME category, which provides residue level nomenclature mapping for polymer entities.The bean for pdbx_struct_oper_list categorya bean to contain the data of the _struct linesContains the data for _struct_asymA bean that stores data from the mmcif category _struct_connA class containing the _struct_ncs_oper dataA class to containt the _struct_ref field dataA class to store sequence mismatch annotationsCreated by Matt on 11/1/2015.Created by Matt on 10/31/2015.