Class EntitySrcGen
java.lang.Object
org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen
Data items in the ENTITY_SRC_GEN category record details of
the source from which the entity was obtained in cases
where the source was genetically manipulated. The
following are treated separately: items pertaining to the tissue
from which the gene was obtained, items pertaining to the host
organism for gene expression and items pertaining to the actual
producing organism (plasmid).
- Author:
- Andreas Prlic
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionvoid
setEntity_id
(String entity_id) void
setExpression_system_id
(String expression_system_id) void
setGene_src_common_name
(String gene_src_common_name) void
setGene_src_details
(String gene_src_details) void
setGene_src_dev_stage
(String gene_src_dev_stage) void
setGene_src_genus
(String gene_src_genus) void
setGene_src_species
(String gene_src_species) void
setGene_src_strain
(String gene_src_strain) void
setGene_src_tissue
(String gene_src_tissue) void
setGene_src_tissue_fraction
(String gene_src_tissue_fraction) void
setHost_org_common_name
(String host_org_common_name) void
setHost_org_details
(String host_org_details) void
setHost_org_genus
(String host_org_genus) void
setHost_org_species
(String host_org_species) void
setHost_org_strain
(String host_org_strain) void
setPdbx_alt_source_flag
(String pdbx_alt_source_flag) void
setPdbx_beg_seq_num
(String pdbx_beg_seq_num) void
setPdbx_description
(String pdbx_description) void
setPdbx_end_seq_num
(String pdbx_end_seq_num) void
setPdbx_gene_src_atcc
(String pdbx_gene_src_atcc) void
setPdbx_gene_src_cell
(String pdbx_gene_src_cell) void
setPdbx_gene_src_cell_line
(String pdbx_gene_src_cell_line) void
setPdbx_gene_src_cellular_location
(String pdbx_gene_src_cellular_location) void
setPdbx_gene_src_fragment
(String pdbx_gene_src_fragment) void
setPdbx_gene_src_gene
(String pdbx_gene_src_gene) void
setPdbx_gene_src_ncbi_taxonomy_id
(String pdbx_gene_src_ncbi_taxonomy_id) void
setPdbx_gene_src_organ
(String pdbx_gene_src_organ) void
setPdbx_gene_src_organelle
(String pdbx_gene_src_organelle) void
setPdbx_gene_src_plasmid
(String pdbx_gene_src_plasmid) void
setPdbx_gene_src_plasmid_name
(String pdbx_gene_src_plasmid_name) void
setPdbx_gene_src_scientific_name
(String pdbx_gene_src_scientific_name) void
setPdbx_gene_src_variant
(String pdbx_gene_src_variant) void
setPdbx_host_org_atcc
(String pdbx_host_org_atcc) void
setPdbx_host_org_cell
(String pdbx_host_org_cell) void
setPdbx_host_org_cell_line
(String pdbx_host_org_cell_line) void
setPdbx_host_org_cellular_location
(String pdbx_host_org_cellular_location) void
setPdbx_host_org_culture_collection
(String pdbx_host_org_culture_collection) void
setPdbx_host_org_gene
(String pdbx_host_org_gene) void
setPdbx_host_org_ncbi_taxonomy_id
(String pdbx_host_org_ncbi_taxonomy_id) void
setPdbx_host_org_organ
(String pdbx_host_org_organ) void
setPdbx_host_org_organelle
(String pdbx_host_org_organelle) void
setPdbx_host_org_scientific_name
(String pdbx_host_org_scientific_name) void
setPdbx_host_org_strain
(String pdbx_host_org_strain) void
setPdbx_host_org_tissue
(String pdbx_host_org_tissue) void
setPdbx_host_org_tissue_fraction
(String pdbx_host_org_tissue_fraction) void
setPdbx_host_org_variant
(String pdbx_host_org_variant) void
setPdbx_host_org_vector
(String pdbx_host_org_vector) void
setPdbx_host_org_vector_type
(String pdbx_host_org_vector_type) void
setPdbx_seq_type
(String pdbx_seq_type) void
setPdbx_src_id
(String pdbx_src_id) void
setPlasmid_details
(String plasmid_details) void
setPlasmid_name
(String plasmid_name) void
setStart_construct_id
(String start_construct_id)
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Constructor Details
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EntitySrcGen
public EntitySrcGen()
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Method Details
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getEntity_id
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setEntity_id
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getExpression_system_id
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setExpression_system_id
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getGene_src_common_name
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setGene_src_common_name
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getGene_src_details
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setGene_src_details
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getGene_src_dev_stage
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setGene_src_dev_stage
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getGene_src_genus
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setGene_src_genus
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getGene_src_species
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setGene_src_species
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getGene_src_strain
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setGene_src_strain
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getGene_src_tissue
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setGene_src_tissue
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getGene_src_tissue_fraction
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setGene_src_tissue_fraction
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getHost_org_common_name
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setHost_org_common_name
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getHost_org_details
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setHost_org_details
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getHost_org_genus
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setHost_org_genus
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getHost_org_species
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setHost_org_species
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getHost_org_strain
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setHost_org_strain
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getPdbx_src_id
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setPdbx_src_id
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getPdbx_seq_type
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setPdbx_seq_type
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getPdbx_alt_source_flag
- Returns:
- the pdbx_alt_source_flag
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setPdbx_alt_source_flag
- Parameters:
pdbx_alt_source_flag
- the pdbx_alt_source_flag to set
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getPdbx_beg_seq_num
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setPdbx_beg_seq_num
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getPdbx_end_seq_num
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setPdbx_end_seq_num
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getPdbx_description
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setPdbx_description
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getPdbx_gene_src_atcc
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setPdbx_gene_src_atcc
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getPdbx_gene_src_cell
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setPdbx_gene_src_cell
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getPdbx_gene_src_cell_line
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setPdbx_gene_src_cell_line
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getPdbx_gene_src_cellular_location
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setPdbx_gene_src_cellular_location
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getPdbx_gene_src_fragment
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setPdbx_gene_src_fragment
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getPdbx_gene_src_gene
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setPdbx_gene_src_gene
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getPdbx_gene_src_ncbi_taxonomy_id
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setPdbx_gene_src_ncbi_taxonomy_id
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getPdbx_gene_src_organ
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setPdbx_gene_src_organ
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getPdbx_gene_src_organelle
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setPdbx_gene_src_organelle
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getPdbx_gene_src_plasmid
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setPdbx_gene_src_plasmid
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getPdbx_gene_src_plasmid_name
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setPdbx_gene_src_plasmid_name
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getPdbx_gene_src_scientific_name
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setPdbx_gene_src_scientific_name
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getPdbx_gene_src_variant
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setPdbx_gene_src_variant
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getPdbx_host_org_atcc
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setPdbx_host_org_atcc
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getPdbx_host_org_cell
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setPdbx_host_org_cell
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getPdbx_host_org_cell_line
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setPdbx_host_org_cell_line
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getPdbx_host_org_cellular_location
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setPdbx_host_org_cellular_location
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getPdbx_host_org_culture_collection
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setPdbx_host_org_culture_collection
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getPdbx_host_org_gene
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setPdbx_host_org_gene
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getPdbx_host_org_ncbi_taxonomy_id
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setPdbx_host_org_ncbi_taxonomy_id
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getPdbx_host_org_organ
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setPdbx_host_org_organ
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getPdbx_host_org_organelle
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setPdbx_host_org_organelle
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getPdbx_host_org_scientific_name
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setPdbx_host_org_scientific_name
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getPdbx_host_org_strain
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setPdbx_host_org_strain
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getPdbx_host_org_tissue
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setPdbx_host_org_tissue
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getPdbx_host_org_tissue_fraction
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setPdbx_host_org_tissue_fraction
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getPdbx_host_org_variant
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setPdbx_host_org_variant
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getPdbx_host_org_vector
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setPdbx_host_org_vector
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getPdbx_host_org_vector_type
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setPdbx_host_org_vector_type
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getPlasmid_details
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setPlasmid_details
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getPlasmid_name
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setPlasmid_name
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getStart_construct_id
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setStart_construct_id
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