Class EntitySrcGen

java.lang.Object
org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen

public class EntitySrcGen extends Object
Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated. The following are treated separately: items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid).
Author:
Andreas Prlic
  • Constructor Details

    • EntitySrcGen

      public EntitySrcGen()
  • Method Details

    • getEntity_id

      public String getEntity_id()
    • setEntity_id

      public void setEntity_id(String entity_id)
    • getExpression_system_id

      public String getExpression_system_id()
    • setExpression_system_id

      public void setExpression_system_id(String expression_system_id)
    • getGene_src_common_name

      public String getGene_src_common_name()
    • setGene_src_common_name

      public void setGene_src_common_name(String gene_src_common_name)
    • getGene_src_details

      public String getGene_src_details()
    • setGene_src_details

      public void setGene_src_details(String gene_src_details)
    • getGene_src_dev_stage

      public String getGene_src_dev_stage()
    • setGene_src_dev_stage

      public void setGene_src_dev_stage(String gene_src_dev_stage)
    • getGene_src_genus

      public String getGene_src_genus()
    • setGene_src_genus

      public void setGene_src_genus(String gene_src_genus)
    • getGene_src_species

      public String getGene_src_species()
    • setGene_src_species

      public void setGene_src_species(String gene_src_species)
    • getGene_src_strain

      public String getGene_src_strain()
    • setGene_src_strain

      public void setGene_src_strain(String gene_src_strain)
    • getGene_src_tissue

      public String getGene_src_tissue()
    • setGene_src_tissue

      public void setGene_src_tissue(String gene_src_tissue)
    • getGene_src_tissue_fraction

      public String getGene_src_tissue_fraction()
    • setGene_src_tissue_fraction

      public void setGene_src_tissue_fraction(String gene_src_tissue_fraction)
    • getHost_org_common_name

      public String getHost_org_common_name()
    • setHost_org_common_name

      public void setHost_org_common_name(String host_org_common_name)
    • getHost_org_details

      public String getHost_org_details()
    • setHost_org_details

      public void setHost_org_details(String host_org_details)
    • getHost_org_genus

      public String getHost_org_genus()
    • setHost_org_genus

      public void setHost_org_genus(String host_org_genus)
    • getHost_org_species

      public String getHost_org_species()
    • setHost_org_species

      public void setHost_org_species(String host_org_species)
    • getHost_org_strain

      public String getHost_org_strain()
    • setHost_org_strain

      public void setHost_org_strain(String host_org_strain)
    • getPdbx_src_id

      public String getPdbx_src_id()
    • setPdbx_src_id

      public void setPdbx_src_id(String pdbx_src_id)
    • getPdbx_seq_type

      public String getPdbx_seq_type()
    • setPdbx_seq_type

      public void setPdbx_seq_type(String pdbx_seq_type)
    • getPdbx_alt_source_flag

      public String getPdbx_alt_source_flag()
      Returns:
      the pdbx_alt_source_flag
    • setPdbx_alt_source_flag

      public void setPdbx_alt_source_flag(String pdbx_alt_source_flag)
      Parameters:
      pdbx_alt_source_flag - the pdbx_alt_source_flag to set
    • getPdbx_beg_seq_num

      public String getPdbx_beg_seq_num()
    • setPdbx_beg_seq_num

      public void setPdbx_beg_seq_num(String pdbx_beg_seq_num)
    • getPdbx_end_seq_num

      public String getPdbx_end_seq_num()
    • setPdbx_end_seq_num

      public void setPdbx_end_seq_num(String pdbx_end_seq_num)
    • getPdbx_description

      public String getPdbx_description()
    • setPdbx_description

      public void setPdbx_description(String pdbx_description)
    • getPdbx_gene_src_atcc

      public String getPdbx_gene_src_atcc()
    • setPdbx_gene_src_atcc

      public void setPdbx_gene_src_atcc(String pdbx_gene_src_atcc)
    • getPdbx_gene_src_cell

      public String getPdbx_gene_src_cell()
    • setPdbx_gene_src_cell

      public void setPdbx_gene_src_cell(String pdbx_gene_src_cell)
    • getPdbx_gene_src_cell_line

      public String getPdbx_gene_src_cell_line()
    • setPdbx_gene_src_cell_line

      public void setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line)
    • getPdbx_gene_src_cellular_location

      public String getPdbx_gene_src_cellular_location()
    • setPdbx_gene_src_cellular_location

      public void setPdbx_gene_src_cellular_location(String pdbx_gene_src_cellular_location)
    • getPdbx_gene_src_fragment

      public String getPdbx_gene_src_fragment()
    • setPdbx_gene_src_fragment

      public void setPdbx_gene_src_fragment(String pdbx_gene_src_fragment)
    • getPdbx_gene_src_gene

      public String getPdbx_gene_src_gene()
    • setPdbx_gene_src_gene

      public void setPdbx_gene_src_gene(String pdbx_gene_src_gene)
    • getPdbx_gene_src_ncbi_taxonomy_id

      public String getPdbx_gene_src_ncbi_taxonomy_id()
    • setPdbx_gene_src_ncbi_taxonomy_id

      public void setPdbx_gene_src_ncbi_taxonomy_id(String pdbx_gene_src_ncbi_taxonomy_id)
    • getPdbx_gene_src_organ

      public String getPdbx_gene_src_organ()
    • setPdbx_gene_src_organ

      public void setPdbx_gene_src_organ(String pdbx_gene_src_organ)
    • getPdbx_gene_src_organelle

      public String getPdbx_gene_src_organelle()
    • setPdbx_gene_src_organelle

      public void setPdbx_gene_src_organelle(String pdbx_gene_src_organelle)
    • getPdbx_gene_src_plasmid

      public String getPdbx_gene_src_plasmid()
    • setPdbx_gene_src_plasmid

      public void setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid)
    • getPdbx_gene_src_plasmid_name

      public String getPdbx_gene_src_plasmid_name()
    • setPdbx_gene_src_plasmid_name

      public void setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name)
    • getPdbx_gene_src_scientific_name

      public String getPdbx_gene_src_scientific_name()
    • setPdbx_gene_src_scientific_name

      public void setPdbx_gene_src_scientific_name(String pdbx_gene_src_scientific_name)
    • getPdbx_gene_src_variant

      public String getPdbx_gene_src_variant()
    • setPdbx_gene_src_variant

      public void setPdbx_gene_src_variant(String pdbx_gene_src_variant)
    • getPdbx_host_org_atcc

      public String getPdbx_host_org_atcc()
    • setPdbx_host_org_atcc

      public void setPdbx_host_org_atcc(String pdbx_host_org_atcc)
    • getPdbx_host_org_cell

      public String getPdbx_host_org_cell()
    • setPdbx_host_org_cell

      public void setPdbx_host_org_cell(String pdbx_host_org_cell)
    • getPdbx_host_org_cell_line

      public String getPdbx_host_org_cell_line()
    • setPdbx_host_org_cell_line

      public void setPdbx_host_org_cell_line(String pdbx_host_org_cell_line)
    • getPdbx_host_org_cellular_location

      public String getPdbx_host_org_cellular_location()
    • setPdbx_host_org_cellular_location

      public void setPdbx_host_org_cellular_location(String pdbx_host_org_cellular_location)
    • getPdbx_host_org_culture_collection

      public String getPdbx_host_org_culture_collection()
    • setPdbx_host_org_culture_collection

      public void setPdbx_host_org_culture_collection(String pdbx_host_org_culture_collection)
    • getPdbx_host_org_gene

      public String getPdbx_host_org_gene()
    • setPdbx_host_org_gene

      public void setPdbx_host_org_gene(String pdbx_host_org_gene)
    • getPdbx_host_org_ncbi_taxonomy_id

      public String getPdbx_host_org_ncbi_taxonomy_id()
    • setPdbx_host_org_ncbi_taxonomy_id

      public void setPdbx_host_org_ncbi_taxonomy_id(String pdbx_host_org_ncbi_taxonomy_id)
    • getPdbx_host_org_organ

      public String getPdbx_host_org_organ()
    • setPdbx_host_org_organ

      public void setPdbx_host_org_organ(String pdbx_host_org_organ)
    • getPdbx_host_org_organelle

      public String getPdbx_host_org_organelle()
    • setPdbx_host_org_organelle

      public void setPdbx_host_org_organelle(String pdbx_host_org_organelle)
    • getPdbx_host_org_scientific_name

      public String getPdbx_host_org_scientific_name()
    • setPdbx_host_org_scientific_name

      public void setPdbx_host_org_scientific_name(String pdbx_host_org_scientific_name)
    • getPdbx_host_org_strain

      public String getPdbx_host_org_strain()
    • setPdbx_host_org_strain

      public void setPdbx_host_org_strain(String pdbx_host_org_strain)
    • getPdbx_host_org_tissue

      public String getPdbx_host_org_tissue()
    • setPdbx_host_org_tissue

      public void setPdbx_host_org_tissue(String pdbx_host_org_tissue)
    • getPdbx_host_org_tissue_fraction

      public String getPdbx_host_org_tissue_fraction()
    • setPdbx_host_org_tissue_fraction

      public void setPdbx_host_org_tissue_fraction(String pdbx_host_org_tissue_fraction)
    • getPdbx_host_org_variant

      public String getPdbx_host_org_variant()
    • setPdbx_host_org_variant

      public void setPdbx_host_org_variant(String pdbx_host_org_variant)
    • getPdbx_host_org_vector

      public String getPdbx_host_org_vector()
    • setPdbx_host_org_vector

      public void setPdbx_host_org_vector(String pdbx_host_org_vector)
    • getPdbx_host_org_vector_type

      public String getPdbx_host_org_vector_type()
    • setPdbx_host_org_vector_type

      public void setPdbx_host_org_vector_type(String pdbx_host_org_vector_type)
    • getPlasmid_details

      public String getPlasmid_details()
    • setPlasmid_details

      public void setPlasmid_details(String plasmid_details)
    • getPlasmid_name

      public String getPlasmid_name()
    • setPlasmid_name

      public void setPlasmid_name(String plasmid_name)
    • getStart_construct_id

      public String getStart_construct_id()
    • setStart_construct_id

      public void setStart_construct_id(String start_construct_id)