Package org.biojava.nbio.structure.io.mmcif.chem

Enum Class ResidueType

java.lang.Object
java.lang.Enum<ResidueType>
org.biojava.nbio.structure.io.mmcif.chem.ResidueType
All Implemented Interfaces:
Serializable, Comparable<ResidueType>, Constable
public enum ResidueType extends Enum<ResidueType> implements Serializable
Enumerates the possible classifications of residues. These are generally more specific than PolymerTypes This information is derived from the mmcif dictionary.
Since:
1.7
Author:
mulvaney, Andreas Prlic
See Also:

  • Enum Constant Details

    • atomn

      public static final ResidueType atomn

    • dPeptideLinking

      public static final ResidueType dPeptideLinking

    • lPeptideLinking

      public static final ResidueType lPeptideLinking

    • glycine

      public static final ResidueType glycine

    • peptideLike

      public static final ResidueType peptideLike

    • dPeptideAminoTerminus

      public static final ResidueType dPeptideAminoTerminus

    • lPeptideAminoTerminus

      public static final ResidueType lPeptideAminoTerminus

    • dPeptideCarboxyTerminus

      public static final ResidueType dPeptideCarboxyTerminus

    • lPeptideCarboxyTerminus

      public static final ResidueType lPeptideCarboxyTerminus

    • dnaLinking

      public static final ResidueType dnaLinking

    • rnaLinking

      public static final ResidueType rnaLinking

    • dna3PrimeTerminus

      public static final ResidueType dna3PrimeTerminus

    • rna3PrimeTerminus

      public static final ResidueType rna3PrimeTerminus

    • dna5PrimeTerminus

      public static final ResidueType dna5PrimeTerminus

    • rna5PrimeTerminus

      public static final ResidueType rna5PrimeTerminus

    • dSaccharide

      public static final ResidueType dSaccharide

    • dSaccharide14and14linking

      public static final ResidueType dSaccharide14and14linking

    • dSaccharide14and16linking

      public static final ResidueType dSaccharide14and16linking

    • lSaccharide

      public static final ResidueType lSaccharide

    • lSaccharide14and14linking

      public static final ResidueType lSaccharide14and14linking

    • lSaccharide14and16linking

      public static final ResidueType lSaccharide14and16linking

    • saccharide

      public static final ResidueType saccharide

    • dBetaPeptideCGammaLinking

      public static final ResidueType dBetaPeptideCGammaLinking

    • dGammaPeptideCDeltaLinking

      public static final ResidueType dGammaPeptideCDeltaLinking

    • lBetaPeptideCGammaLinking

      public static final ResidueType lBetaPeptideCGammaLinking

    • lGammaPeptideCDeltaLinking

      public static final ResidueType lGammaPeptideCDeltaLinking

    • lDNALinking

      public static final ResidueType lDNALinking

    • lRNALinking

      public static final ResidueType lRNALinking

    • nonPolymer

      public static final ResidueType nonPolymer

    • otherChemComp

      public static final ResidueType otherChemComp

  • Field Details

    • polymerType

      public final PolymerType polymerType
      The associated PolymerType

    • chem_comp_type

      public final String chem_comp_type
      String value of the type

  • Method Details

    • values

      public static ResidueType[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static ResidueType valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • getPolymerType

      public PolymerType getPolymerType()
      Gets the associated PolymerType, which are less specific
      Returns:

    • getResidueTypeFromString

      public static ResidueType getResidueTypeFromString(String chem_comp_type)