ChemCompTools

java.lang.Object

org.biojava.nbio.structure.io.mmcif.chem.ChemCompTools

public class ChemCompTools extends Object

Some tools for working with chemical compounds.

Since:: 1.7
Author:: Andreas Prlic

Constructor Summary

Constructors

Constructor

Description

ChemCompTools()
Method Summary

Modifier and Type

Method

Description

static Character

getAminoOneLetter(String chemCompId)

static String

getAminoThreeLetter(Character c)

static Character

getDNAOneLetter(String chemCompId)

static String

getDNATwoLetter(Character c)

static Character

getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)

static final boolean

isStandardChemComp(ChemComp cc)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ChemCompTools
  
  public ChemCompTools()
Method Details
- getAminoOneLetter
  
  public static Character getAminoOneLetter(String chemCompId)
- getDNAOneLetter
  
  public static Character getDNAOneLetter(String chemCompId)
- getAminoThreeLetter
  
  public static String getAminoThreeLetter(Character c)
- getDNATwoLetter
  
  public static String getDNATwoLetter(Character c)
- isStandardChemComp
  
  public static final boolean isStandardChemComp(ChemComp cc)
- getOneLetterCode
  
  public static Character getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)