Class MetalBondConsumer

Method Details

• documentStart

  public void documentStart()

  Description copied from interface: MMcifConsumer

  called at start of document

  Specified by:

  documentStart in interface MMcifConsumer

• documentEnd

  public void documentEnd()

  Description copied from interface: MMcifConsumer

  called at end of document

  Specified by:

  documentEnd in interface MMcifConsumer

• newAtomSite

  public void newAtomSite(AtomSite atom)

  Description copied from interface: MMcifConsumer

  A new AtomSite record has been read. Contains the Atom data

  Specified by:

  newAtomSite in interface MMcifConsumer

• newEntity

  public void newEntity(Entity entity)

  Specified by:

  newEntity in interface MMcifConsumer

• newEntityPolySeq

  public void newEntityPolySeq(EntityPolySeq epolseq)

  Specified by:

  newEntityPolySeq in interface MMcifConsumer

• newStructAsym

  public void newStructAsym(StructAsym sasym)

  Specified by:

  newStructAsym in interface MMcifConsumer

• setStruct

  public void setStruct(Struct struct)

  Specified by:

  setStruct in interface MMcifConsumer

• newDatabasePDBrev

  public void newDatabasePDBrev(DatabasePDBrev dbrev)

  Specified by:

  newDatabasePDBrev in interface MMcifConsumer

• newDatabasePDBrevRecord

  public void newDatabasePDBrevRecord(DatabasePdbrevRecord dbrev)

  Specified by:

  newDatabasePDBrevRecord in interface MMcifConsumer

• newDatabasePDBremark

  public void newDatabasePDBremark(DatabasePDBremark remark)

  Specified by:

  newDatabasePDBremark in interface MMcifConsumer

• newExptl

  public void newExptl(Exptl exptl)

  Specified by:

  newExptl in interface MMcifConsumer

• newCell

  public void newCell(Cell cell)

  Specified by:

  newCell in interface MMcifConsumer

• newSymmetry

  public void newSymmetry(Symmetry symmetry)

  Specified by:

  newSymmetry in interface MMcifConsumer

• newStructNcsOper

  public void newStructNcsOper(StructNcsOper sNcsOper)

  Specified by:

  newStructNcsOper in interface MMcifConsumer

• newAtomSites

  public void newAtomSites(AtomSites atomSites)

  Specified by:

  newAtomSites in interface MMcifConsumer

• newStructRef

  public void newStructRef(StructRef sref)

  Specified by:

  newStructRef in interface MMcifConsumer

• newStructRefSeq

  public void newStructRefSeq(StructRefSeq sref)

  Specified by:

  newStructRefSeq in interface MMcifConsumer

• newStructRefSeqDif

  public void newStructRefSeqDif(StructRefSeqDif sref)

  Specified by:

  newStructRefSeqDif in interface MMcifConsumer

• newStructSite

  public void newStructSite(StructSite sref)

  Specified by:

  newStructSite in interface MMcifConsumer

• newStructSiteGen

  public void newStructSiteGen(StructSiteGen sref)

  Specified by:

  newStructSiteGen in interface MMcifConsumer

• newPdbxPolySeqScheme

  public void newPdbxPolySeqScheme(PdbxPolySeqScheme ppss)

  Specified by:

  newPdbxPolySeqScheme in interface MMcifConsumer

• newPdbxNonPolyScheme

  public void newPdbxNonPolyScheme(PdbxNonPolyScheme ppss)

  Specified by:

  newPdbxNonPolyScheme in interface MMcifConsumer

• newPdbxEntityNonPoly

  public void newPdbxEntityNonPoly(PdbxEntityNonPoly pen)

  Specified by:

  newPdbxEntityNonPoly in interface MMcifConsumer

• newStructKeywords

  public void newStructKeywords(StructKeywords kw)

  Specified by:

  newStructKeywords in interface MMcifConsumer

• newRefine

  public void newRefine(Refine r)

  Specified by:

  newRefine in interface MMcifConsumer

• newChemComp

  public void newChemComp(ChemComp c)

  Specified by:

  newChemComp in interface MMcifConsumer

• newChemCompDescriptor

  public void newChemCompDescriptor(ChemCompDescriptor ccd)

  Specified by:

  newChemCompDescriptor in interface MMcifConsumer

• newPdbxStructOperList

  public void newPdbxStructOperList(PdbxStructOperList structOper)

  Specified by:

  newPdbxStructOperList in interface MMcifConsumer

• newPdbxStrucAssembly

  public void newPdbxStrucAssembly(PdbxStructAssembly strucAssembly)

  Specified by:

  newPdbxStrucAssembly in interface MMcifConsumer

• newPdbxStrucAssemblyGen

  public void newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly)

  Specified by:

  newPdbxStrucAssemblyGen in interface MMcifConsumer

• newChemCompAtom

  public void newChemCompAtom(ChemCompAtom atom)

  Specified by:

  newChemCompAtom in interface MMcifConsumer

• newPdbxChemCompIndentifier

  public void newPdbxChemCompIndentifier(PdbxChemCompIdentifier id)

  Specified by:

  newPdbxChemCompIndentifier in interface MMcifConsumer

• newChemCompBond

  public void newChemCompBond(ChemCompBond bond)

  Specified by:

  newChemCompBond in interface MMcifConsumer

• newPdbxChemCompDescriptor

  public void newPdbxChemCompDescriptor(PdbxChemCompDescriptor desc)

  Specified by:

  newPdbxChemCompDescriptor in interface MMcifConsumer

• newEntitySrcGen

  public void newEntitySrcGen(EntitySrcGen entitySrcGen)

  Specified by:

  newEntitySrcGen in interface MMcifConsumer

• newEntitySrcNat

  public void newEntitySrcNat(EntitySrcNat entitySrcNat)

  Specified by:

  newEntitySrcNat in interface MMcifConsumer

• newEntitySrcSyn

  public void newEntitySrcSyn(EntitySrcSyn entitySrcSyn)

  Specified by:

  newEntitySrcSyn in interface MMcifConsumer

• newStructConn

  public void newStructConn(StructConn structConn)

  Specified by:

  newStructConn in interface MMcifConsumer

• newAuditAuthor

  public void newAuditAuthor(AuditAuthor aa)

  Description copied from interface: MMcifConsumer

  AuditAuthor contains the info from the PDB-AUTHOR records.

  Specified by:

  newAuditAuthor in interface MMcifConsumer

• newGenericData

  public void newGenericData(String category, List<String> loopFields, List<String> lineData)

  Description copied from interface: MMcifConsumer

  This method is called if no particular handler for the provided cif category has been implemented so far.

  Specified by:

  newGenericData in interface MMcifConsumer

  Parameters:

  category - The category that is being processed.

  loopFields - the fields of this category.

  lineData - the data that is being provided.

• setFileParsingParameters

  public void setFileParsingParameters(FileParsingParameters params)

  Specified by:

  setFileParsingParameters in interface MMcifConsumer

• getFileParsingParameters

  public FileParsingParameters getFileParsingParameters()

  Specified by:

  getFileParsingParameters in interface MMcifConsumer

• getDefinitions

  public Map<String,List<MetalBondDistance>> getDefinitions()