ChemCompGroupFactory

java.lang.Object

org.biojava.nbio.structure.io.mmcif.ChemCompGroupFactory

public class ChemCompGroupFactory extends Object

Constructor Summary

Constructors

Constructor

Description

ChemCompGroupFactory()
Method Summary

Modifier and Type

Method

Description

static void

clearCache()

Force the in-memory cache to be reset.

static ChemComp

getChemComp(String recordName)

static ChemCompProvider

getChemCompProvider()

static Group

getGroupFromChemCompDictionary(String recordName)

static String

getOneLetterCode(ChemComp cc)

static void

setChemCompProvider(ChemCompProvider provider)

The new ChemCompProvider will be set in the static variable, so this provider will be used from now on until it is changed again.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ChemCompGroupFactory
  
  public ChemCompGroupFactory()
Method Details
- getChemComp
  
  public static ChemComp getChemComp(String recordName)
- setChemCompProvider
  
  public static void setChemCompProvider(ChemCompProvider provider)
  
  The new ChemCompProvider will be set in the static variable, so this provider will be used from now on until it is changed again. Note that this change can have unexpected behavior of code executed afterwards.
  Changing the provider also resets the cache, so any groups previously accessed will be reread or re-downloaded.
  
  Parameters:
  
  provider -
- getChemCompProvider
  
  public static ChemCompProvider getChemCompProvider()
- clearCache
  
  public static void clearCache()
  
  Force the in-memory cache to be reset. Note that the ChemCompProvider may have additional memory or disk caches that need to be cleared too.
- getGroupFromChemCompDictionary
  
  public static Group getGroupFromChemCompDictionary(String recordName)
- getOneLetterCode
  
  public static String getOneLetterCode(ChemComp cc)