Package org.biojava.nbio.structure.gui.util
package org.biojava.nbio.structure.gui.util
Some utility classes for the protein structure GUIs. Possible start classes are one level higher at org.biojava.nbio.structure.ngui.BiojavaJmol, and org.biojava.nbio.structure.gui.AlignmentGui.
-
ClassDescriptionA class that obtains two structures via DAS and aligns them This is done in a separate thread.a frame showing the alternative alignments, which are the result of a structure superimpositiona class that manages the conversion of sequence coordinate system to JPanel drawing coordinatesCreate the menu for BiojavaJmolA class to define where a structure for the alignment is coming fromA class to define where a structure for the alignment is coming fromA JPanel to upload 2 custom PDB files.A Text Panel that allows the user to specify multiple structure identifiers, space separated.a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate SequenceListener and FeatureListener eventsA class that draws a Sequence as a rectangle, a scale display over it.To be implemented by JPanels that are part of the GUI to trigger structure aligmnents.