EcodInstallation.EcodParser

java.lang.Object

org.biojava.nbio.structure.ecod.EcodInstallation.EcodParser

Enclosing class:: EcodInstallation

public static class EcodInstallation.EcodParser extends Object

Field Summary

Fields

Modifier and Type

Field

Description

static final String

F_UNCLASSIFIED

String for unclassified F-groups

static final String

IS_DOMAIN_ASSEMBLY

Deprecated way of indicating there is an assembly.

static final String

IS_REPRESENTATIVE

Indicates a manual representative

static final String

NOT_DOMAIN_ASSEMBLY

String for single-domain assemblies

static final String

NOT_REPRESENTATIVE

Indicates not a manual representative
Constructor Summary

Constructors

Constructor

Description

EcodParser(BufferedReader reader)

EcodParser(File file)

EcodParser(Reader reader)

EcodParser(String filename)
Method Summary

Modifier and Type

Method

Description

List<EcodDomain>

getDomains()

String

getVersion()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- F_UNCLASSIFIED
  
  public static final String F_UNCLASSIFIED
  
  String for unclassified F-groups
  See Also:
  
  Constant Field Values
- NOT_DOMAIN_ASSEMBLY
  
  public static final String NOT_DOMAIN_ASSEMBLY
  
  String for single-domain assemblies
  See Also:
  
  Constant Field Values
- IS_DOMAIN_ASSEMBLY
  
  public static final String IS_DOMAIN_ASSEMBLY
  
  Deprecated way of indicating there is an assembly. replaced by the assembly id
  See Also:
  
  Constant Field Values
- IS_REPRESENTATIVE
  
  public static final String IS_REPRESENTATIVE
  
  Indicates a manual representative
  See Also:
  
  Constant Field Values
- NOT_REPRESENTATIVE
  
  public static final String NOT_REPRESENTATIVE
  
  Indicates not a manual representative
  See Also:
  
  Constant Field Values
Constructor Details
- EcodParser
  
  public EcodParser(String filename) throws IOException
  
  Throws:
  
  IOException
- EcodParser
  
  public EcodParser(File file) throws IOException
  
  Throws:
  
  IOException
- EcodParser
  
  public EcodParser(Reader reader) throws IOException
  
  Throws:
  
  IOException
- EcodParser
  
  public EcodParser(BufferedReader reader) throws IOException
  
  Throws:
  
  IOException
Method Details
- getDomains
  
  public List<EcodDomain> getDomains()
  
  Returns:
  
  a list of all EcodDomains
- getVersion
  
  public String getVersion()
  
  Returns:
  
  the requestedVersion for this file, or null if none was parsed