Package org.biojava.nbio.structure.align.pairwise
package org.biojava.nbio.structure.align.pairwise
Classes for the pairwise alignment of structures.
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ClassDescriptionA class to listen to progress of the structure alignment calculationsA class to track the alignment results in a flat filea comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD.Implements a class which handles one possible (alternative) solution.Joins the initial Fragments together to larger Fragmentsa pair of fragments of two protein structuresa class to perform Gotoh algorithm