AligNPE

java.lang.Object

org.biojava.nbio.structure.align.pairwise.AligNPE

public class AligNPE extends Object

Constructor Summary

Constructors

Constructor

Description

AligNPE()
Method Summary

Modifier and Type

Method

Description

static Alignable

align_NPE(Matrix sim, StrucAligParameters params)

Align without penalizing end-gaps.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AligNPE
  
  public AligNPE()
Method Details
- align_NPE
  
  public static Alignable align_NPE(Matrix sim, StrucAligParameters params)
  
  Align without penalizing end-gaps. Return alignment and score
  
  Parameters:
  
  sim - the similarity matrix
  
  params - the structure alignment parameters to be used
  
  Returns:
  
  an Alignable