Package org.biojava.nbio.structure.align.multiple.mc
package org.biojava.nbio.structure.align.multiple.mc
-
ClassesClassDescriptionMain class of the Java implementation of the Combinatorial Extension - Monte Carlo (CEMC) Algorithm, as it was originally described by C.Guda, E.D.Scheeff, P.E.This class takes a MultipleAlignment seed previously generated and runs a Monte Carlo optimization in order to improve the overall score and highlight common structural motifs.Contains the parameters to be sent to the MC optimization.