Package org.biojava.nbio.structure.align.gui
package org.biojava.nbio.structure.align.gui
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ClassDescriptionA class that obtains two structures via DAS and aligns them This is done in a separate thread.A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.Ask the user to provide a directory containting PDB files.A utility class for visualistion of structure alignmentsDisplays the dot plot trace for an alignment.a GUI that allows to watch progress as multiple alignments are being processed.Tracks Memory allocated & used, displayed in graph form.Create the menus for structure alignment GUI windows (JFrames).Creates a frame to display a DotPlotPanel.A class that obtains structures via DAS and aligns them.A JFrame that allows to trigger a multiple structure alignment, either from files in a directory or after manual upload.Utility Class that provides helper methods for the visualization of
MultipleAlignments.Loads an alignment in an XML format and displays its content in a new Jmol panel.Shows the interatomic Distance Matrices of all the Structures aligned in different Frames.Save an alignment to a specified File by the user.UI forConfigStrucAligParams, for the AlignmentGUI.A Panel that allows user to specify PDB & chain ID, as well as sub-ranges